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LEF-9

Euk-Vir

Artogeia_rapae_granulovirus

LEF-9__YP_003429423__Artogeia_rapae_granulovirus__362830

Identity

Accession:
YP_003429423 ↗
Protein ID:
LEF-9
Kingdom:
euk

Quality

72.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Betabaculovirus_arrapae

TaxID: 362830

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-174
PDB
D2 high residues 183-284
PDB
Domain cluster: rep: DNA-dependent_RNA_polymerase_subunit_rpo147__YP_232980__Vaccinia_virus__10245__D277-311_370-443
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05094.18 best LEF-9 208.3 2.80e-61 100.0% 21.2%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ynjD04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.81 75.0 6.59e-01 100.0% 95.2%
1twfA03 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.80 70.0 7.11e-01 100.0% 94.1%
7eu1A01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.79 73.0 6.48e-01 100.0% 83.8%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.77 61.0 6.27e-01 93.1% 88.5%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.76 64.0 6.42e-01 90.2% 96.1%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.75 59.0 5.91e-01 90.2% 80.2%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.75 58.0 6.32e-01 88.2% 98.8%
8e9gG01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.70 54.0 5.53e-01 81.4% 100.0%
4jcwA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.69 57.0 5.75e-01 88.2% 99.0%
2vpzA05 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.68 61.0 5.21e-01 98.0% 83.6%
2ki8A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.67 62.0 5.79e-01 100.0% 91.2%
3d30A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.67 60.0 5.93e-01 97.1% 95.4%
2pvpA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.62 39.0 4.66e-01 85.3% 100.0%
2oq5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 43.0 4.35e-01 75.5% 77.9%
1gsaA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 38.0 4.54e-01 86.3% 98.5%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.60 43.0 4.13e-01 76.5% 87.6%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 4.39e-01 93.1% 88.6%
3nutB02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.57 41.0 3.84e-01 100.0% 59.4%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 4.26e-01 93.1% 83.5%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.57 38.0 3.73e-01 88.2% 63.3%
1fnfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 4.20e-01 93.1% 84.3%
3l5iA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 4.20e-01 91.2% 85.2%
6brbD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 4.05e-01 89.2% 82.8%
2f1xB00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.55 45.0 4.09e-01 88.2% 91.5%
2dm4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 4.20e-01 93.1% 84.0%
2olsA01 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.55 44.0 3.70e-01 88.2% 78.1%
1zud400 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.54 33.0 3.94e-01 92.2% 93.9%
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 4.17e-01 88.2% 87.4%
3b4nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.96e-01 89.2% 85.2%
1va9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.88e-01 89.2% 69.7%
3up1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 4.09e-01 90.2% 81.7%
1oeyA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 36.0 3.86e-01 86.3% 87.8%
2z0uA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 43.0 4.08e-01 93.1% 76.6%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 44.0 3.33e-01 91.2% 45.5%
1x5kA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.95e-01 93.1% 83.2%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.97e-01 88.2% 85.3%
4dywA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.50 35.0 3.27e-01 71.6% 90.7%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3670775 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.81 74.0 6.98e-01 100.0% 82.5%
3966248 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 71.0 6.84e-01 100.0% 82.6%
4886549 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.81 76.0 6.47e-01 100.0% 87.1%
2886100 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 75.0 5.97e-01 100.0% 74.7%
3509068 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.81 75.0 5.91e-01 100.0% 86.0%
4015760 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 75.0 5.96e-01 100.0% 88.7%
3836120 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.81 75.0 5.96e-01 100.0% 91.3%
3427279 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.81 66.0 5.36e-01 86.3% 56.7%
3698542 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.81 75.0 5.85e-01 100.0% 85.4%
1746098 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.81 75.0 6.26e-01 100.0% 82.1%
4129914 1.1.2.31 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.80 75.0 5.76e-01 100.0% 62.8%
3684523 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.80 73.0 6.77e-01 100.0% 79.2%
3596090 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 74.0 7.01e-01 100.0% 84.2%
4948679 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.80 74.0 5.08e-01 100.0% 49.1%
4943460 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.80 74.0 5.98e-01 100.0% 86.5%
5081033 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 74.0 5.83e-01 100.0% 82.5%
4026183 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.80 74.0 6.43e-01 100.0% 89.3%
3309021 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.80 65.0 6.35e-01 86.3% 97.3%
5058903 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.80 74.0 5.92e-01 100.0% 86.8%
3360997 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.80 74.0 6.51e-01 100.0% 80.7%
3374701 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.79 74.0 6.01e-01 100.0% 84.4%
3186315 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 66.0 6.67e-01 88.2% 97.0%
5060218 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 62.0 6.72e-01 84.3% 100.0%
4203264 1.1.2.26 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 0.77 63.0 6.50e-01 86.3% 100.0%
5069203 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 64.0 6.79e-01 95.1% 98.9%
5042283 208.1.1.56 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › MazE_antitoxin 0.77 64.0 4.47e-01 88.2% 31.5%
4021338 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 63.0 6.40e-01 86.3% 96.0%
4116299 1.1.2.26 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 0.77 64.0 6.59e-01 88.2% 100.0%
4027672 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.77 63.0 6.26e-01 86.3% 88.6%
4270657 1.1.2.26 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 0.77 63.0 6.68e-01 88.2% 98.9%
5053173 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 60.0 6.23e-01 87.3% 88.4%
5055583 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 61.0 6.61e-01 85.3% 100.0%
3927447 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.77 63.0 6.13e-01 86.3% 90.0%
3625788 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 49.0 5.80e-01 74.5% 97.1%
4887355 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.75 65.0 6.10e-01 100.0% 76.6%
4871383 1.1.2.26 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 0.74 61.0 6.42e-01 88.2% 100.0%
3597196 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 62.0 6.39e-01 88.2% 96.8%
3605376 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.74 61.0 6.36e-01 88.2% 98.9%
4518867 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 58.0 6.04e-01 85.3% 100.0%
5053008 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 52.0 4.50e-01 74.5% 80.0%
4048983 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 63.0 6.30e-01 95.1% 97.1%
3888411 1.1.2.40 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N 0.72 58.0 5.82e-01 86.3% 99.0%
4890564 101.1.2.869 ↗ alpha arrays › HTH › HTH › winged helix domain › IML1_N 0.72 54.0 5.95e-01 83.3% 98.8%
3783660 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 61.0 6.18e-01 93.1% 92.0%
3725766 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 62.0 6.42e-01 97.1% 100.0%
4402984 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 57.0 5.70e-01 84.3% 100.0%
4030729 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.70 64.0 6.34e-01 97.1% 97.1%
3658254 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.70 49.0 4.96e-01 72.5% 88.0%
3926811 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 60.0 6.08e-01 93.1% 100.0%
3557903 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.69 58.0 6.06e-01 97.1% 97.9%
3187087 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.69 63.0 5.88e-01 100.0% 97.6%
4011478 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 63.0 5.97e-01 100.0% 94.2%
5008491 1.1.2.47 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF27352 0.69 56.0 5.70e-01 88.2% 99.0%
3477728 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.69 57.0 5.94e-01 96.1% 96.8%
3842541 1.1.2.38 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_PEX6 0.68 60.0 5.91e-01 96.1% 99.1%
3218726 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 60.0 6.09e-01 96.1% 99.0%
3357414 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.67 62.0 5.66e-01 100.0% 94.6%
3948899 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.67 60.0 5.30e-01 98.0% 84.1%
3274137 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.67 61.0 5.68e-01 100.0% 92.8%
4370157 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.66 61.0 5.39e-01 100.0% 83.2%
3643011 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.66 61.0 5.56e-01 100.0% 96.9%
3772228 1.1.2.40 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N 0.65 59.0 5.45e-01 100.0% 95.4%
3722909 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.65 60.0 5.41e-01 100.0% 94.8%
3188465 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.65 52.0 4.86e-01 88.2% 99.2%
4505406 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 48.0 4.92e-01 87.3% 95.0%
3223684 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 42.0 4.23e-01 89.2% 81.9%
3933388 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 40.0 4.08e-01 94.1% 80.0%
3994441 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.54 48.0 4.59e-01 100.0% 90.8%
3477359 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 37.0 3.52e-01 89.2% 59.3%
3689558 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 4.05e-01 93.1% 81.0%
4012825 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.68e-01 93.1% 90.6%
3261392 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.52 46.0 3.66e-01 100.0% 51.4%
3592719 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 37.0 3.06e-01 88.2% 39.5%
3766325 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.51 42.0 3.42e-01 92.2% 47.6%
4928745 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.51 41.0 3.65e-01 90.2% 94.8%
3573833 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.99e-01 87.3% 92.7%
D3 high residues 303-394
PDB
Domain cluster: rep: late_expression_factor_9__YP_009552184__Malacosoma_neustria_nucleopolyhedrovirus__38012__D322-387
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05094.18 best LEF-9 110.1 1.70e-31 100.0% 18.7%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.72 49.0 4.24e-01 70.7% 61.1%
4uz0A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.68 48.0 4.92e-01 73.9% 78.2%
2yxlA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.58 41.0 3.51e-01 72.8% 69.7%
3apzA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.58 44.0 3.15e-01 81.5% 67.6%
2z1qB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 43.0 3.89e-01 83.7% 85.3%
6h5hA00 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.55 38.0 4.25e-01 73.9% 98.6%
2kj8A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.53 43.0 4.04e-01 89.1% 77.1%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.53 42.0 3.67e-01 90.2% 56.7%
2lmgA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 36.0 3.97e-01 77.2% 89.2%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.51 37.0 3.34e-01 89.1% 54.1%
7wu8B01 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.50 36.0 3.86e-01 89.1% 89.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3736410 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 37.0 2.56e-01 92.4% 17.4%
4023188 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.55 39.0 3.51e-01 76.1% 91.9%
4600685 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.52 42.0 3.71e-01 89.1% 57.9%
2576237 632.18.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.52 35.0 3.73e-01 81.5% 78.8%
D4 medium residues 434-493
PDB