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LEF-9
Euk-VirHomarus_gammarus_nudivirus
LEF-9__YP_010087686__Homarus_gammarus_nudivirus__2509616
Identity
- Accession:
- YP_010087686 ↗
- Protein ID:
- LEF-9
- Kingdom:
- euk
Quality
59.9
mean pLDDT
Taxonomy
TaxID: 2509616
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 194-313
Domain cluster:
rep: DNA-dependent_RNA_polymerase_subunit_rpo147__YP_232980__Vaccinia_virus__10245__D277-311_370-443
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00623.26 best | RNA_pol_Rpb1_2 | 33.2 | 8.60e-08 | 58.3% | 33.1% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfA03 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.91 | 69.0 | 7.58e-01 | 90.8% | 93.1% |
| 3hu1A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.83 | 58.0 | 6.43e-01 | 85.0% | 88.5% |
| 4ga6A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.81 | 55.0 | 6.53e-01 | 84.2% | 100.0% |
| 1ynjD04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.81 | 72.0 | 6.67e-01 | 92.5% | 95.9% |
| 1wlfA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.81 | 55.0 | 6.50e-01 | 86.7% | 100.0% |
| 7eu1A01 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.81 | 73.0 | 6.88e-01 | 95.0% | 86.6% |
| 1cz4A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.80 | 58.0 | 6.61e-01 | 95.0% | 98.9% |
| 1cr5A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.77 | 49.0 | 6.03e-01 | 72.5% | 100.0% |
| 2napA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.76 | 52.0 | 5.39e-01 | 70.8% | 100.0% |
| 1qcsA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.74 | 50.0 | 5.85e-01 | 73.3% | 100.0% |
| 1zc1A01 | 2.40.40.50 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain | 0.72 | 59.0 | 6.34e-01 | 92.5% | 100.0% |
| 7xc8A01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.70 | 49.0 | 5.09e-01 | 71.7% | 100.0% |
| 4avrA00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.70 | 49.0 | 5.54e-01 | 72.5% | 100.0% |
| 1n10A01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.67 | 51.0 | 5.21e-01 | 78.3% | 100.0% |
| 1y5lA02 | 3.40.50.12440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 60.0 | 3.38e-01 | 95.0% | 13.1% |
| 1dmrA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.65 | 54.0 | 4.87e-01 | 89.2% | 84.0% |
| 1q16A13 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.65 | 58.0 | 5.34e-01 | 95.8% | 86.7% |
| 3d30A01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.65 | 54.0 | 5.68e-01 | 91.7% | 98.1% |
| 6dgiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.63 | 36.0 | 4.68e-01 | 74.2% | 100.0% |
| 1gsaA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.61 | 34.0 | 4.43e-01 | 85.8% | 100.0% |
| 1fu0A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.60 | 35.0 | 4.03e-01 | 76.7% | 79.3% |
| 1dx5M02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 40.0 | 4.10e-01 | 70.8% | 82.4% |
| 2rhqB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.57 | 30.0 | 3.47e-01 | 84.2% | 69.9% |
| 2g5dA01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.56 | 48.0 | 4.05e-01 | 92.5% | 84.6% |
| 5vqfD01 | 2.60.120.970 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 45.0 | 3.64e-01 | 87.5% | 77.0% |
| 3l5iA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 34.0 | 3.84e-01 | 82.5% | 86.4% |
| 7d44I01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 36.0 | 2.81e-01 | 73.3% | 80.0% |
| 3g7dA03 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 31.0 | 3.14e-01 | 81.7% | 59.7% |
ECOD (97)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3966248 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.91 | 71.0 | 7.33e-01 | 93.3% | 84.3% |
| 3670775 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.88 | 73.0 | 7.40e-01 | 95.0% | 85.8% |
| 3684523 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.88 | 73.0 | 7.25e-01 | 95.0% | 82.4% |
| 4890084 | 1.1.2.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 | 0.87 | 69.0 | 6.91e-01 | 92.5% | 80.3% |
| 3596090 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.87 | 74.0 | 7.42e-01 | 95.0% | 87.5% |
| 5011232 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.85 | 56.0 | 6.77e-01 | 72.5% | 100.0% |
| 3706161 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.85 | 59.0 | 6.94e-01 | 90.0% | 100.0% |
| 3602941 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.85 | 59.0 | 6.94e-01 | 85.8% | 100.0% |
| 4024752 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.83 | 59.0 | 6.47e-01 | 88.3% | 87.0% |
| 5053172 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.83 | 58.0 | 6.81e-01 | 86.7% | 100.0% |
| 3409396 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.83 | 58.0 | 6.24e-01 | 88.3% | 81.9% |
| 4241168 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.83 | 54.0 | 6.60e-01 | 70.0% | 100.0% |
| 3486347 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.83 | 61.0 | 6.80e-01 | 90.0% | 95.8% |
| 3836120 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.82 | 74.0 | 6.06e-01 | 92.5% | 91.8% |
| 5045002 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.82 | 56.0 | 6.40e-01 | 85.0% | 92.2% |
| 4948679 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.82 | 72.0 | 5.00e-01 | 90.0% | 48.5% |
| 4097451 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.82 | 57.0 | 6.72e-01 | 72.5% | 100.0% |
| 4977163 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.82 | 59.0 | 6.74e-01 | 85.8% | 100.0% |
| 4887355 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.82 | 65.0 | 6.49e-01 | 95.0% | 79.8% |
| 5058903 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.82 | 73.0 | 6.08e-01 | 92.5% | 87.4% |
| 5081033 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 73.0 | 5.98e-01 | 93.3% | 83.5% |
| 3509068 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.81 | 74.0 | 6.07e-01 | 95.0% | 88.0% |
| 4991006 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 56.0 | 6.59e-01 | 86.7% | 100.0% |
| 5074983 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 59.0 | 6.74e-01 | 95.0% | 100.0% |
| 3698542 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.81 | 74.0 | 6.00e-01 | 95.0% | 87.3% |
| 5028227 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 56.0 | 6.59e-01 | 71.7% | 100.0% |
| 4607187 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 57.0 | 6.34e-01 | 82.5% | 90.5% |
| 4026183 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.81 | 72.0 | 6.58e-01 | 92.5% | 90.0% |
| 3374701 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.81 | 74.0 | 6.28e-01 | 95.0% | 86.7% |
| 4015760 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 74.0 | 6.09e-01 | 95.0% | 90.8% |
| 4977837 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 56.0 | 6.59e-01 | 85.0% | 100.0% |
| 33 | 1.1.2.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PEX-2N | 0.81 | 55.0 | 6.50e-01 | 86.7% | 100.0% |
| 4970875 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 56.0 | 6.53e-01 | 85.0% | 100.0% |
| 4943460 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.81 | 74.0 | 6.20e-01 | 95.0% | 88.6% |
| 4129914 | 1.1.2.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 | 0.81 | 73.0 | 5.82e-01 | 94.2% | 64.2% |
| 1746098 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.80 | 73.0 | 6.35e-01 | 94.2% | 84.5% |
| 4886549 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.80 | 73.0 | 6.60e-01 | 95.0% | 89.7% |
| 3360997 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.80 | 73.0 | 6.77e-01 | 95.0% | 83.4% |
| 5053341 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.80 | 62.0 | 6.73e-01 | 95.8% | 96.0% |
| 5077330 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.80 | 53.0 | 5.71e-01 | 71.7% | 78.1% |
| 5053174 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.80 | 56.0 | 6.37e-01 | 90.0% | 95.6% |
| 2886100 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.80 | 71.0 | 5.93e-01 | 94.2% | 76.8% |
| 31 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.79 | 58.0 | 6.63e-01 | 90.8% | 100.0% |
| 3611762 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.79 | 57.0 | 6.41e-01 | 75.0% | 93.7% |
| 4947745 | 1.1.2.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_2 | 0.79 | 58.0 | 6.58e-01 | 87.5% | 100.0% |
| 5001485 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.79 | 55.0 | 6.43e-01 | 87.5% | 100.0% |
| 4995354 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.79 | 55.0 | 6.43e-01 | 84.2% | 100.0% |
| 4346976 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.79 | 54.0 | 6.39e-01 | 86.7% | 100.0% |
| 5053173 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 56.0 | 6.22e-01 | 77.5% | 92.6% |
| 3783660 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 57.0 | 6.27e-01 | 87.5% | 91.0% |
| 3492328 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 51.0 | 6.17e-01 | 71.7% | 100.0% |
| 4027677 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 54.0 | 6.33e-01 | 73.3% | 100.0% |
| 3267813 | 1.1.2.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N | 0.77 | 53.0 | 6.17e-01 | 84.2% | 100.0% |
| 3514644 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.76 | 55.0 | 6.25e-01 | 88.3% | 100.0% |
| 4270657 | 1.1.2.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 | 0.76 | 55.0 | 6.28e-01 | 86.7% | 100.0% |
| 3824979 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 55.0 | 6.23e-01 | 89.2% | 100.0% |
| 3391397 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 54.0 | 6.17e-01 | 88.3% | 100.0% |
| 3748306 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 57.0 | 6.36e-01 | 85.0% | 98.9% |
| 3789369 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 60.0 | 6.54e-01 | 90.0% | 100.0% |
| 3186315 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 60.0 | 6.50e-01 | 88.3% | 100.0% |
| 4280405 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 54.0 | 6.11e-01 | 85.0% | 100.0% |
| 4378314 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 54.0 | 6.12e-01 | 85.0% | 100.0% |
| 3477728 | 1.1.2.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N | 0.74 | 56.0 | 6.22e-01 | 90.0% | 100.0% |
| 4944699 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.73 | 48.0 | 5.78e-01 | 70.0% | 100.0% |
| 3195760 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.73 | 51.0 | 5.85e-01 | 88.3% | 96.7% |
| 3412967 | 1.1.2.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N | 0.73 | 53.0 | 5.99e-01 | 85.0% | 100.0% |
| 5076079 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.72 | 50.0 | 5.14e-01 | 70.8% | 93.9% |
| 3273202 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.72 | 58.0 | 6.27e-01 | 90.8% | 100.0% |
| 3343851 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.72 | 62.0 | 4.94e-01 | 90.8% | 83.9% |
| 4243381 | 1.1.2.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 | 0.72 | 54.0 | 5.93e-01 | 78.3% | 100.0% |
| 3617423 | 1.1.2.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N | 0.71 | 54.0 | 6.03e-01 | 87.5% | 100.0% |
| 5005268 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.71 | 57.0 | 6.15e-01 | 85.8% | 100.0% |
| 3352481 | 1.1.2.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PF26429 | 0.71 | 63.0 | 5.89e-01 | 94.2% | 91.7% |
| 3684407 | 1.1.2.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PF26429 | 0.71 | 65.0 | 5.84e-01 | 99.2% | 93.3% |
| 4014411 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.71 | 51.0 | 5.65e-01 | 75.0% | 100.0% |
| 4441475 | 1.1.2.12 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PTAC | 0.71 | 56.0 | 6.05e-01 | 95.8% | 100.0% |
| 5006288 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.71 | 55.0 | 5.91e-01 | 89.2% | 93.3% |
| 5005269 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.70 | 63.0 | 5.94e-01 | 95.0% | 99.3% |
| 3735360 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.70 | 61.0 | 6.36e-01 | 91.7% | 100.0% |
| 4419943 | 1.1.2.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 | 0.70 | 51.0 | 5.58e-01 | 75.8% | 98.0% |
| 3646137 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.70 | 63.0 | 5.18e-01 | 95.0% | 86.5% |
| 3828556 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.69 | 59.0 | 5.56e-01 | 89.2% | 100.0% |
| 4116299 | 1.1.2.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 | 0.69 | 53.0 | 5.86e-01 | 85.8% | 100.0% |
| 3343849 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.69 | 52.0 | 5.81e-01 | 89.2% | 100.0% |
| 4871383 | 1.1.2.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 | 0.68 | 51.0 | 5.67e-01 | 81.7% | 100.0% |
| 5056546 | 3349.1.1.3 ↗ | a+b two layers › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › PolC_DP2_cat | 0.68 | 64.0 | 4.16e-01 | 100.0% | 96.0% |
| 3218726 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.68 | 53.0 | 5.78e-01 | 87.5% | 99.0% |
| 5030460 | 1.1.2.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat | 0.68 | 64.0 | 4.12e-01 | 100.0% | 95.3% |
| 3406944 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.68 | 54.0 | 5.15e-01 | 86.7% | 72.1% |
| 3175987 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.68 | 63.0 | 5.14e-01 | 100.0% | 83.8% |
| 3722909 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.67 | 59.0 | 5.64e-01 | 93.3% | 98.5% |
| 4048983 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.66 | 54.0 | 5.76e-01 | 90.0% | 100.0% |
| 3948899 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.66 | 55.0 | 5.17e-01 | 89.2% | 84.1% |
| 5074694 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.65 | 55.0 | 5.23e-01 | 89.2% | 95.0% |
| 3701559 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.64 | 52.0 | 5.23e-01 | 85.8% | 96.7% |
| 3772228 | 1.1.2.40 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N | 0.64 | 52.0 | 5.12e-01 | 89.2% | 80.8% |
| 4370157 | 1.1.2.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 | 0.62 | 53.0 | 5.02e-01 | 91.7% | 85.3% |
D2
high
residues 334-421
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4wu0A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.60 | 47.0 | 3.14e-01 | 85.2% | 58.1% |
| 4dkcB00 | 1.20.1250.80 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 | 0.57 | 45.0 | 3.76e-01 | 86.4% | 71.9% |
| 7dniB01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 37.0 | 3.74e-01 | 71.6% | 77.5% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 33.0 | 3.62e-01 | 72.7% | 79.4% |
| 3f6tA02 | 1.10.20.110 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.52 | 35.0 | 3.08e-01 | 70.5% | 91.8% |
| 1e2aA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 38.0 | 3.69e-01 | 92.0% | 72.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3368223 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.55 | 40.0 | 3.13e-01 | 78.4% | 68.4% |
| 3561335 | 3755.4.1.37 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › TPR-like_Epg5_mid | 0.55 | 42.0 | 3.71e-01 | 79.5% | 78.4% |
D3
medium
residues 76-152_167-189
D4
medium
residues 465-539