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LK985322.1__CDW17188.1__X__00007
Bact-VirLK985322.1__CDW17188.1__X__00007
Identity
- Accession:
- LK985322 ↗
- Kingdom:
- phage
Quality
87.6
mean pLDDT
Taxonomy
TaxID: 1522092
Cluster
View cluster (36 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-64
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 52.0 | 5.12e-01 | 100.0% | 71.2% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 50.0 | 4.95e-01 | 98.4% | 71.2% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 48.0 | 5.29e-01 | 95.2% | 91.8% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 48.0 | 4.91e-01 | 96.8% | 76.7% |
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 41.0 | 3.86e-01 | 100.0% | 51.9% |
| 4m7dA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 53.0 | 5.32e-01 | 98.4% | 87.7% |
| 2hgaA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.64 | 54.0 | 5.01e-01 | 100.0% | 96.5% |
| 2vlgC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.64 | 50.0 | 4.32e-01 | 87.3% | 87.3% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.64 | 47.0 | 4.86e-01 | 98.4% | 85.0% |
| 4limA00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.63 | 40.0 | 2.48e-01 | 100.0% | 10.8% |
| 4dmzA02 | 3.30.70.2880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 44.0 | 3.45e-01 | 74.6% | 96.4% |
| 1zhhB01 | 3.30.450.220 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain | 0.62 | 46.0 | 3.52e-01 | 82.5% | 77.7% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 53.0 | 5.08e-01 | 100.0% | 84.5% |
| 4c92F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 55.0 | 5.17e-01 | 100.0% | 83.1% |
| 3loiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 40.0 | 2.91e-01 | 100.0% | 26.2% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.61 | 46.0 | 3.79e-01 | 100.0% | 45.9% |
| 4emhA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 51.0 | 5.23e-01 | 96.8% | 98.3% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.60 | 43.0 | 3.75e-01 | 76.2% | 92.7% |
| 1cttA02 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.59 | 47.0 | 3.81e-01 | 100.0% | 47.0% |
| 2fr5A00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.59 | 45.0 | 3.50e-01 | 100.0% | 38.2% |
| 3b8fB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.59 | 44.0 | 3.40e-01 | 100.0% | 35.9% |
| 4c92A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 52.0 | 4.12e-01 | 100.0% | 50.0% |
| 6ieoA03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.58 | 45.0 | 4.09e-01 | 92.1% | 85.1% |
| 2oolA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 45.0 | 3.83e-01 | 87.3% | 76.6% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.56 | 38.0 | 3.66e-01 | 100.0% | 59.2% |
| 7xlqD01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 42.0 | 3.40e-01 | 82.5% | 73.6% |
| 4byfC02 | 1.20.58.530 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 46.0 | 3.54e-01 | 98.4% | 100.0% |
| 1ce7A02 | 4.10.470.10 | Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 | 0.55 | 45.0 | 4.27e-01 | 95.2% | 89.9% |
| 5ljvA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 43.0 | 3.32e-01 | 93.7% | 35.3% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.55 | 38.0 | 3.72e-01 | 100.0% | 65.3% |
| 2greF02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.54 | 40.0 | 3.77e-01 | 98.4% | 64.1% |
| 3o27B00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.54 | 28.0 | 2.96e-01 | 76.2% | 56.1% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.53 | 47.0 | 3.77e-01 | 100.0% | 51.3% |
| 1f0xA01 | 3.30.70.610 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › D-lactate dehydrogenase, cap domain, subdomain 1 | 0.53 | 46.0 | 3.96e-01 | 100.0% | 83.0% |
| 4q0jA03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.52 | 42.0 | 3.31e-01 | 90.5% | 59.9% |
| 1v30A00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.52 | 42.0 | 3.49e-01 | 92.1% | 85.6% |
| 8enbA01 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.52 | 41.0 | 3.74e-01 | 85.7% | 77.1% |
| 1e0yA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 38.0 | 3.21e-01 | 100.0% | 45.9% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 44.0 | 4.08e-01 | 100.0% | 92.5% |
| 3v67A01 | 3.30.450.210 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component sensor protein CpxA, periplasmic domain | 0.50 | 38.0 | 3.19e-01 | 84.1% | 83.5% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5017559 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.86 | 78.0 | 7.79e-01 | 98.4% | 98.5% |
| 3959440 | 4.1.1.180 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3107 | 0.77 | 70.0 | 6.95e-01 | 100.0% | 98.5% |
| 4995694 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 58.0 | 6.19e-01 | 100.0% | 94.5% |
| 4953913 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.74 | 54.0 | 5.57e-01 | 100.0% | 81.7% |
| 5004476 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 51.0 | 5.06e-01 | 100.0% | 73.8% |
| 4451993 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.69 | 49.0 | 5.07e-01 | 100.0% | 80.0% |
| 3972526 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 60.0 | 5.87e-01 | 100.0% | 90.0% |
| 4010681 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.68 | 51.0 | 4.50e-01 | 100.0% | 54.7% |
| 4499953 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.68 | 48.0 | 4.97e-01 | 100.0% | 80.0% |
| 4085259 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.68 | 44.0 | 2.86e-01 | 100.0% | 15.8% |
| 4660084 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.67 | 51.0 | 4.99e-01 | 100.0% | 75.4% |
| 5067992 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.65 | 57.0 | 5.56e-01 | 100.0% | 92.9% |
| 4185009 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.65 | 50.0 | 4.97e-01 | 100.0% | 80.0% |
| 4104821 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.64 | 49.0 | 4.65e-01 | 100.0% | 69.3% |
| 5067811 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.64 | 44.0 | 3.13e-01 | 71.4% | 61.6% |
| 4261362 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.64 | 48.0 | 4.70e-01 | 100.0% | 74.3% |
| 5033892 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 48.0 | 4.79e-01 | 100.0% | 83.1% |
| 5045214 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 49.0 | 4.77e-01 | 100.0% | 78.6% |
| 4212091 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.62 | 47.0 | 4.71e-01 | 100.0% | 80.0% |
| 4034317 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 49.0 | 4.96e-01 | 98.4% | 87.3% |
| 4033484 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 49.0 | 4.97e-01 | 100.0% | 87.5% |
| 4945344 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 48.0 | 3.10e-01 | 100.0% | 17.2% |
| 3168996 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.60 | 54.0 | 4.28e-01 | 100.0% | 66.4% |
| 4264671 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.60 | 44.0 | 4.15e-01 | 100.0% | 65.0% |
| 3289944 | 4.1.1.323 ↗ | beta barrels › SH3 › SH3 › SH3 › WYL | 0.59 | 47.0 | 4.22e-01 | 100.0% | 62.2% |
| 4957350 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 41.0 | 4.12e-01 | 100.0% | 72.3% |
| 3588755 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 52.0 | 5.00e-01 | 100.0% | 85.1% |
| 3879988 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.58 | 37.0 | 2.58e-01 | 96.8% | 19.1% |
| 5000520 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.57 | 37.0 | 3.15e-01 | 95.2% | 39.0% |
| 3621341 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.57 | 44.0 | 4.19e-01 | 84.1% | 94.7% |
| 3597559 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.57 | 40.0 | 3.20e-01 | 74.6% | 80.8% |
| 224066 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.57 | 38.0 | 3.66e-01 | 100.0% | 58.4% |
| 3630069 | 223.1.1.101 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 | 0.56 | 41.0 | 2.42e-01 | 81.0% | 14.8% |
| 3606454 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.55 | 46.0 | 4.58e-01 | 93.7% | 96.9% |
| 4972339 | 75.1.1.4 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Cyclophil_like | 0.55 | 47.0 | 3.84e-01 | 100.0% | 94.6% |
| 5047427 | 75.1.1.4 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Cyclophil_like | 0.55 | 46.0 | 3.81e-01 | 96.8% | 99.2% |
| 4959077 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 46.0 | 4.66e-01 | 98.4% | 100.0% |
| 4813386 | 7530.1.1.1 ↗ | a/b three-layered sandwiches › Replicase polyprotein 1a N-terminal macro-like domain › Replicase polyprotein 1a N-terminal macro-like domain › Replicase polyprotein 1a N-terminal macro-like domain › NSP2_gammaCoV | 0.54 | 42.0 | 3.79e-01 | 85.7% | 82.0% |
| 3786162 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.54 | 36.0 | 3.26e-01 | 71.4% | 56.8% |
| 3781 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.54 | 47.0 | 3.39e-01 | 100.0% | 60.0% |
| 3930427 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.53 | 38.0 | 3.84e-01 | 100.0% | 76.9% |
| 3620606 | 385.1.1.1 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › Cys_knot | 0.52 | 41.0 | 3.69e-01 | 84.1% | 75.3% |
| 4985633 | 75.1.1.4 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Cyclophil_like | 0.52 | 44.0 | 3.55e-01 | 100.0% | 87.4% |
| 5572 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.52 | 42.0 | 3.49e-01 | 92.1% | 85.6% |
| 3711220 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.51 | 43.0 | 4.29e-01 | 95.2% | 93.8% |
| 3834577 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 42.0 | 3.41e-01 | 95.2% | 88.5% |
| 3505589 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.50 | 34.0 | 2.90e-01 | 73.0% | 63.3% |