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LN610576.1__CEF89621.1__X__00131
Bact-VirLN610576.1__CEF89621.1__X__00131
Identity
- Accession:
- LN610576 ↗
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vandenendeviridae›
Nankokuvirus›
Pseudomonas_phage_vB_PaeM_PAO1_Ab17
TaxID: 1548904
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-47
Domain cluster:
rep: SR-VP_4-6_scaffold_141_559231_prodigal-single.1__X__X__00119__D44-79
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8azbA01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.80 | 46.0 | 2.84e-01 | 88.1% | 10.8% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.79 | 62.0 | 4.09e-01 | 90.5% | 23.0% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.69 | 48.0 | 3.66e-01 | 95.2% | 33.3% |
| 2w5qA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.63 | 52.0 | 4.01e-01 | 92.9% | 60.2% |
| 3u37A02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.62 | 52.0 | 3.20e-01 | 92.9% | 20.2% |
| 7r0kA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.62 | 50.0 | 3.29e-01 | 88.1% | 23.5% |
| 2x5eA00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.61 | 46.0 | 2.86e-01 | 90.5% | 14.1% |
| 4ohfA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.60 | 38.0 | 2.46e-01 | 95.2% | 13.1% |
| 4b6dB00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.60 | 45.0 | 4.13e-01 | 83.3% | 68.4% |
| 3zg9A00 | 6.20.370.110 | Special › Other non-globular › Rhinovirus 14, subunit 4 › | 0.60 | 34.0 | 3.49e-01 | 83.3% | 51.2% |
| 1y8fA00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.60 | 48.0 | 4.53e-01 | 90.5% | 80.4% |
| 3vhtB02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.59 | 40.0 | 4.36e-01 | 81.0% | 91.2% |
| 7yulA01 | 1.10.10.2590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain | 0.59 | 44.0 | 3.53e-01 | 81.0% | 57.6% |
| 2vrwB03 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.58 | 43.0 | 4.08e-01 | 83.3% | 77.4% |
| 1wjpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.57 | 39.0 | 4.18e-01 | 88.1% | 100.0% |
| 3kxyT00 | 6.20.290.10 | Special › Other non-globular › Dna Ligase; domain 1 › | 0.56 | 34.0 | 2.99e-01 | 83.3% | 36.9% |
| 3n2xA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 45.0 | 2.71e-01 | 88.1% | 20.1% |
| 2ecjA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 39.0 | 3.63e-01 | 81.0% | 75.9% |
| 3p2aA01 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.54 | 37.0 | 3.90e-01 | 73.8% | 94.4% |
| 2xjyA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.53 | 45.0 | 4.02e-01 | 100.0% | 100.0% |
| 3j7aZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.53 | 42.0 | 3.69e-01 | 97.6% | 97.2% |
| 2xb1A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 38.0 | 3.18e-01 | 92.9% | 64.6% |
| 2poiA00 | 1.10.1170.10 | Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A | 0.52 | 38.0 | 3.34e-01 | 90.5% | 52.6% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.52 | 42.0 | 3.31e-01 | 88.1% | 54.5% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954542 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.92 | 71.0 | 7.59e-01 | 83.3% | 100.0% |
| 3855126 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.83 | 61.0 | 6.50e-01 | 78.6% | 100.0% |
| 5018523 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.81 | 70.0 | 5.94e-01 | 100.0% | 60.0% |
| 3209169 | 375.1.1.274 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ecl1 | 0.80 | 54.0 | 6.00e-01 | 71.4% | 100.0% |
| 3541 | 4107.1.1.1 ↗ | alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR | 0.79 | 62.0 | 4.08e-01 | 90.5% | 22.8% |
| 4155531 | 377.1.1.15 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG | 0.79 | 64.0 | 6.11e-01 | 90.5% | 80.0% |
| 3987428 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.75 | 51.0 | 3.80e-01 | 71.4% | 97.0% |
| 3474498 | 906.2.1.0 ↗ | few secondary structure elements › CCCH zinc finger › SSP1 C3H-type zinc finger › SSP1 C3H-type zinc finger | 0.74 | 55.0 | 5.88e-01 | 81.0% | 97.1% |
| 3397634 | 377.1.1.34 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › FAM76 | 0.73 | 55.0 | 4.84e-01 | 81.0% | 60.0% |
| 3537307 | 377.1.1.34 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › FAM76 | 0.73 | 54.0 | 4.00e-01 | 81.0% | 40.0% |
| 3729526 | 7516.1.1.79 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 | 0.73 | 60.0 | 3.29e-01 | 90.5% | 61.0% |
| 3193128 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.72 | 56.0 | 3.79e-01 | 85.7% | 37.4% |
| 3937741 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 55.0 | 5.63e-01 | 90.5% | 100.0% |
| 3700937 | 377.9.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT | 0.66 | 50.0 | 5.10e-01 | 83.3% | 92.5% |
| 5065366 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.66 | 52.0 | 3.66e-01 | 88.1% | 30.0% |
| 3205914 | 377.9.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › YL1_C | 0.65 | 50.0 | 4.67e-01 | 88.1% | 70.9% |
| 3295061 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.63 | 52.0 | 3.69e-01 | 90.5% | 35.0% |
| 1621265 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.63 | 52.0 | 3.03e-01 | 92.9% | 13.3% |
| 3809619 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.62 | 44.0 | 4.11e-01 | 76.2% | 67.3% |
| 5014447 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.62 | 52.0 | 3.22e-01 | 92.9% | 27.0% |
| 3781281 | 377.9.1.4 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-Mss51 | 0.60 | 48.0 | 4.02e-01 | 90.5% | 57.3% |
| 4070661 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.60 | 49.0 | 4.20e-01 | 88.1% | 67.7% |
| 3244879 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 51.0 | 4.30e-01 | 95.2% | 64.3% |
| 3274996 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.59 | 47.0 | 2.72e-01 | 88.1% | 19.8% |
| 3638055 | 304.48.1.6 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A | 0.59 | 53.0 | 3.37e-01 | 100.0% | 66.2% |
| 3344139 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 45.0 | 4.18e-01 | 85.7% | 72.7% |
| 3704961 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.59 | 49.0 | 3.06e-01 | 97.6% | 51.2% |
| 3614206 | 213.1.1.31 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 | 0.58 | 48.0 | 2.99e-01 | 97.6% | 49.3% |
| 5058066 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.58 | 49.0 | 3.52e-01 | 92.9% | 40.0% |
| 3474295 | 2004.5.1.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN | 0.57 | 45.0 | 2.88e-01 | 92.9% | 53.8% |
| 2642880 | 107.1.1.1 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C | 0.57 | 45.0 | 3.11e-01 | 88.1% | 64.2% |
| 3634484 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 46.0 | 4.04e-01 | 100.0% | 92.9% |
| 3537276 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.56 | 44.0 | 3.41e-01 | 88.1% | 75.8% |
| 4033381 | 3218.1.1.1 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain › Terminase_2 | 0.55 | 46.0 | 3.80e-01 | 90.5% | 62.9% |
| 3509877 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 36.0 | 3.65e-01 | 78.6% | 75.0% |
| 3194733 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 38.0 | 2.94e-01 | 81.0% | 93.3% |
| 3271642 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 36.0 | 3.64e-01 | 81.0% | 100.0% |
| 5029687 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 35.0 | 3.49e-01 | 73.8% | 100.0% |
| 3942276 | 307.1.1.8 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_2 | 0.51 | 39.0 | 2.90e-01 | 100.0% | 59.3% |
| 3583377 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.50 | 40.0 | 3.46e-01 | 90.5% | 56.9% |
D2
high
residues 56-145
Domain cluster:
rep: KJ019146.1__AIX42271.1__Syn7803C16_52__00052__D2-97
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10544.16 best | T5orf172 | 30.6 | 5.40e-07 | 96.7% | 90.8% |
| PF13455.13 | MUG113 | 43.5 | 5.30e-11 | 81.1% | 87.7% |