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LN681534.1__CEK40258.1__PHICD2401_20044__00047

Bact-Vir

LN681534.1__CEK40258.1__PHICD2401_20044__00047

Identity

Accession:
LN681534 ↗
Kingdom:
phage

Quality

80.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_phiCD24-1

TaxID: 1582149

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-55
PDB
D2 high residues 60-123
PDB
Domain cluster: rep: OM868076.1__UPT53073.1__X__00039__D20-69
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12728.14 best HTH_17 27.2 5.40e-06 79.7% 96.1%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 67.0 5.80e-01 98.4% 66.7%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.75 65.0 5.26e-01 96.9% 52.9%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.75 64.0 5.15e-01 96.9% 51.6%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.73 63.0 5.79e-01 96.9% 75.3%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 62.0 6.00e-01 96.9% 90.3%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.71 61.0 6.05e-01 96.9% 92.5%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.70 61.0 4.83e-01 96.9% 50.0%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.70 60.0 5.03e-01 96.9% 54.9%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 44.0 4.27e-01 70.3% 79.2%
1z4hA01 1.10.238.160 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.65 51.0 5.30e-01 87.5% 98.3%
1sseB00 1.10.238.100 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › YAP1 redox domain. Chain B 0.65 49.0 4.47e-01 81.2% 65.1%
2is9A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 54.0 4.52e-01 100.0% 68.1%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 3.65e-01 78.1% 44.4%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 3.50e-01 76.6% 44.7%
4cvnA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 42.0 3.09e-01 73.4% 36.9%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 40.0 3.49e-01 70.3% 64.1%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.97e-01 79.7% 68.5%
3nrvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.39e-01 76.6% 39.5%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.59 40.0 2.50e-01 71.9% 37.0%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.95e-01 81.2% 75.6%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.23e-01 79.7% 37.1%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.82e-01 79.7% 74.1%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.28e-01 81.2% 41.0%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.55e-01 76.6% 59.7%
3qphA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 36.0 3.24e-01 70.3% 79.4%
1mw9X02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.54 41.0 3.14e-01 85.9% 41.7%
3ddlA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 40.0 2.75e-01 82.8% 78.6%
4iggB06 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 40.0 2.82e-01 81.2% 75.3%
2p8tA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 4.27e-01 98.4% 78.7%
7w0kA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 40.0 3.07e-01 93.8% 77.8%
1w3iA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 41.0 2.76e-01 96.9% 86.7%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4375315 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.95 69.0 7.73e-01 75.0% 96.0%
4527613 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.95 70.0 6.41e-01 76.6% 62.0%
4547937 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.94 75.0 7.89e-01 82.8% 94.8%
4176315 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.94 69.0 7.50e-01 78.1% 90.7%
4950846 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.93 70.0 7.81e-01 78.1% 100.0%
3960483 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.93 68.0 7.66e-01 79.7% 98.0%
3278372 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.92 68.0 6.79e-01 76.6% 75.4%
3954117 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.91 73.0 6.53e-01 84.4% 63.5%
3955723 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.91 64.0 7.20e-01 73.4% 94.0%
3281256 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.91 73.0 6.66e-01 84.4% 67.5%
3953197 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.90 72.0 6.18e-01 84.4% 56.8%
5047649 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.89 65.0 7.22e-01 76.6% 100.0%
4191032 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.88 65.0 7.20e-01 82.8% 100.0%
5027627 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.87 69.0 7.40e-01 84.4% 100.0%
4548007 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.87 73.0 6.52e-01 89.1% 67.1%
3589130 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.86 65.0 6.95e-01 79.7% 92.7%
3589467 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.86 65.0 5.84e-01 79.7% 60.0%
3589675 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.84 62.0 6.88e-01 78.1% 100.0%
3289439 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.84 64.0 6.84e-01 81.2% 96.4%
2168161 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.84 62.0 6.51e-01 78.1% 91.2%
4682727 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.83 65.0 6.92e-01 82.8% 98.2%
5028046 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.83 62.0 6.61e-01 79.7% 92.7%
5002797 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.83 65.0 6.75e-01 89.1% 90.0%
4994568 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.82 62.0 6.65e-01 81.2% 94.5%
4974775 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.82 61.0 6.33e-01 81.2% 85.0%
3838564 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.81 65.0 6.74e-01 87.5% 93.3%
4932995 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.81 60.0 6.55e-01 79.7% 100.0%
3285399 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.80 55.0 6.05e-01 71.9% 92.0%
3385701 101.1.9.95 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF3972 0.80 60.0 6.36e-01 82.8% 92.7%
3958314 101.1.9.66 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Rv2175c_wHTH 0.79 57.0 6.12e-01 85.9% 89.1%
3840108 101.1.9.95 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF3972 0.79 61.0 6.30e-01 84.4% 90.0%
4995042 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.79 68.0 6.11e-01 92.2% 90.6%
4643722 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.78 54.0 5.94e-01 73.4% 94.0%
3949463 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 66.0 5.39e-01 96.9% 56.5%
3387406 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 64.0 5.48e-01 96.9% 61.9%
3975516 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.74 64.0 5.39e-01 95.3% 60.0%
3290830 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 64.0 5.22e-01 95.3% 54.8%
3976015 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 64.0 5.96e-01 96.9% 77.5%
4518241 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 64.0 6.10e-01 96.9% 85.3%
4520820 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 63.0 6.00e-01 95.3% 81.3%
3972191 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.73 63.0 4.85e-01 95.3% 45.0%
3284686 101.1.9.84 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.73 63.0 4.28e-01 96.9% 27.0%
3284986 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.73 63.0 5.08e-01 95.3% 52.5%
3278826 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.73 62.0 5.05e-01 95.3% 52.5%
3284779 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 62.0 4.98e-01 95.3% 50.4%
3979434 101.1.9.101 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF1441 0.72 54.0 5.73e-01 81.2% 94.5%
3279459 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 62.0 4.98e-01 95.3% 51.2%
3974460 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 62.0 4.93e-01 96.9% 48.5%
5030468 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 53.0 4.82e-01 81.2% 58.9%
3286117 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 61.0 4.95e-01 96.9% 51.2%
5007668 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 61.0 4.96e-01 96.9% 51.2%
3280706 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 61.0 5.72e-01 96.9% 80.0%
4096952 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 61.0 5.07e-01 96.9% 55.7%
5001454 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.70 55.0 5.28e-01 87.5% 80.0%
4021723 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 54.0 4.69e-01 84.4% 64.2%
2876157 101.1.9.105 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 0.68 52.0 5.51e-01 84.4% 100.0%
4597624 3601.1.1.1 ↗ alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg 0.68 60.0 4.48e-01 98.4% 42.5%
3284690 3601.1.1.0 ↗ alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.65 57.0 4.39e-01 100.0% 46.7%
4948782 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.65 46.0 4.37e-01 75.0% 66.7%
5071075 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.64 46.0 4.15e-01 75.0% 57.6%
5051539 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.64 45.0 3.72e-01 75.0% 47.0%
3272220 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 55.0 4.69e-01 98.4% 64.8%
4992861 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.63 45.0 3.94e-01 75.0% 52.6%
4326566 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 53.0 4.79e-01 98.4% 80.0%
4933930 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.62 47.0 4.43e-01 82.8% 73.8%
4943612 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 45.0 3.61e-01 76.6% 45.0%
5009810 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.62 45.0 4.16e-01 76.6% 63.7%
4946594 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 45.0 3.83e-01 76.6% 51.0%
3718509 2004.1.1.71 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT 0.59 41.0 2.63e-01 73.4% 20.3%
140657 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.59 43.0 3.37e-01 76.6% 38.9%
3189146 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.49e-01 79.7% 47.5%
3788382 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.56 42.0 3.99e-01 82.8% 76.2%
3205121 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 46.0 4.34e-01 95.3% 88.7%
4600071 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.54 35.0 3.67e-01 92.2% 71.7%
4940578 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.54 41.0 3.90e-01 85.9% 83.7%
3308386 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.54 39.0 2.89e-01 81.2% 28.7%
3362615 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.53 39.0 3.04e-01 79.7% 82.7%
3628456 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 29.0 2.36e-01 84.4% 23.4%
3310101 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.52 37.0 3.21e-01 81.2% 49.6%
3826771 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.51 38.0 3.19e-01 84.4% 48.0%
3320650 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.51 36.0 3.23e-01 78.1% 87.0%
3837892 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 2.80e-01 100.0% 67.3%
3804069 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.50 36.0 3.32e-01 81.2% 57.9%