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LN681534.1__CEK40265.1__PHICD2401_20051__00054

Bact-Vir

LN681534.1__CEK40265.1__PHICD2401_20051__00054

Identity

Accession:
LN681534 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 68-116
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 75.0 6.71e-01 100.0% 70.6%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 44.0 4.53e-01 77.6% 62.5%
1znnA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 47.0 2.99e-01 75.5% 18.8%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 55.0 5.37e-01 100.0% 100.0%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.63 51.0 3.66e-01 98.0% 32.1%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 52.0 4.00e-01 98.0% 42.3%
2drpA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 34.0 4.07e-01 87.8% 86.2%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.45e-01 98.0% 65.1%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.31e-01 98.0% 60.0%
1j5yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 50.0 4.54e-01 95.9% 67.2%
2di3A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 52.0 4.52e-01 95.9% 82.7%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 3.79e-01 95.9% 44.7%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 53.0 4.48e-01 95.9% 70.5%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.60 41.0 3.87e-01 100.0% 59.0%
3nrvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 3.65e-01 95.9% 34.9%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.76e-01 95.9% 80.3%
1mwrA03 3.30.1390.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Penicillin-binding protein 2a; domain 3 0.59 45.0 4.04e-01 83.7% 94.3%
3a43B02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.59 39.0 4.54e-01 100.0% 100.0%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.05e-01 91.8% 61.0%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 4.45e-01 95.9% 73.2%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.59e-01 91.8% 91.4%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 50.0 4.72e-01 98.0% 85.0%
1qbjC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 4.47e-01 95.9% 80.3%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.90e-01 95.9% 56.6%
4f78A01 3.30.200.180 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.57 39.0 3.03e-01 71.4% 40.4%
2khoA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 43.0 3.14e-01 89.8% 94.3%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 4.25e-01 95.9% 73.9%
3by6C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 4.06e-01 95.9% 62.3%
2f2hA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 35.0 3.58e-01 95.9% 66.7%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 39.0 2.48e-01 77.6% 18.4%
5i0fB04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 36.0 3.05e-01 100.0% 40.5%
3w7tA04 3.30.1390.40 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30p/L7e 0.54 35.0 3.80e-01 98.0% 100.0%
2xjyA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.54 37.0 3.44e-01 91.8% 57.1%
2e9qA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 36.0 2.41e-01 71.4% 64.4%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 2.91e-01 81.6% 51.1%
6nw1A00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 42.0 4.39e-01 98.0% 97.8%
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.69e-01 95.9% 63.5%
2o2kA01 3.10.196.10 Alpha Beta › Roll › Cobalamin-dependent Methionine Synthase; domain 1 › Vitamin B12-dependent methionine synthase, activation domain 0.50 46.0 2.90e-01 100.0% 96.3%
1yuiA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.50 28.0 2.74e-01 79.6% 40.7%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4519945 101.1.14.4 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 0.90 83.0 8.07e-01 100.0% 98.1%
4384880 101.1.14.3 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.88 82.0 6.63e-01 100.0% 58.8%
2876 101.1.14.2 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.85 75.0 6.68e-01 100.0% 69.6%
4414927 101.1.14.3 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.85 78.0 6.88e-01 100.0% 71.0%
3171408 101.1.14.3 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.82 73.0 7.29e-01 98.0% 96.0%
4155056 101.1.14.0 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.80 71.0 6.04e-01 100.0% 62.5%
3587703 101.1.14.0 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.79 67.0 6.75e-01 100.0% 94.0%
4986404 4008.1.1.0 0.73 45.0 4.49e-01 73.5% 60.0%
4961283 101.1.2.935 alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C 0.68 53.0 4.16e-01 87.8% 77.1%
4010017 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.68 50.0 4.40e-01 77.6% 68.6%
4666101 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 44.0 4.63e-01 100.0% 75.6%
3562527 386.1.1.358 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451 0.65 43.0 4.07e-01 100.0% 56.7%
3217685 822.1.1.0 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.65 46.0 4.37e-01 100.0% 63.8%
5028792 330.7.1.0 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.65 54.0 3.82e-01 95.9% 31.0%
4099915 375.1.1.128 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.63 41.0 4.73e-01 93.9% 94.3%
4021767 7056.1.1.3 few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.63 45.0 4.93e-01 100.0% 95.0%
5036380 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.62 52.0 4.29e-01 100.0% 91.0%
3518250 822.2.1.0 a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like 0.62 39.0 4.21e-01 100.0% 80.0%
4583179 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 51.0 5.01e-01 100.0% 100.0%
4965365 375.1.1.336 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7129 0.61 37.0 4.39e-01 95.9% 100.0%
3276937 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 38.0 4.41e-01 93.9% 91.4%
3491271 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.60 52.0 4.32e-01 95.9% 63.5%
3245932 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 45.0 4.69e-01 100.0% 88.9%
4008034 223.1.1.113 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.58 42.0 3.01e-01 81.6% 34.1%
5068907 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 44.0 4.61e-01 100.0% 91.1%
5013997 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 37.0 3.87e-01 100.0% 73.3%
5027754 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 47.0 4.74e-01 95.9% 88.0%
3719787 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 42.0 4.51e-01 100.0% 100.0%
4967657 375.1.1.325 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC 0.55 37.0 3.85e-01 100.0% 77.8%
3246264 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 48.0 4.64e-01 100.0% 94.5%
3370107 5086.1.1.132 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF547 0.54 37.0 2.47e-01 75.5% 30.4%
4600774 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 46.0 4.48e-01 100.0% 98.2%
4945555 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 36.0 4.08e-01 100.0% 100.0%
None 0.53 35.0 3.61e-01 100.0% 73.3%
3706777 386.1.1.14 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-LYAR 0.53 35.0 3.37e-01 100.0% 60.0%
3335466 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.53 39.0 3.33e-01 85.7% 57.8%
3481559 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.52 37.0 3.53e-01 77.6% 73.3%
4936585 2003.1.4.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.52 40.0 2.58e-01 100.0% 16.5%
5065494 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 37.0 3.71e-01 98.0% 76.0%
3223367 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 44.0 4.05e-01 100.0% 98.5%
3587273 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 43.0 4.11e-01 100.0% 85.0%
3958291 2003.1.4.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain 0.50 35.0 2.27e-01 73.5% 47.6%
D2 medium residues 5-60
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yozA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 47.0 3.37e-01 96.4% 66.1%
2xb0X01 6.10.140.1440 Special › Helix non-globular › Helix Hairpins › 0.55 36.0 2.86e-01 91.1% 30.4%
4qjfB01 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.55 37.0 3.84e-01 80.4% 74.1%
6hbzA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.54 43.0 3.19e-01 91.1% 76.1%
1exzB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 45.0 3.44e-01 98.2% 42.9%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.52 41.0 3.62e-01 89.3% 72.4%
3b4yA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.52 38.0 2.33e-01 78.6% 23.2%
4wpeA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.52 42.0 2.70e-01 91.1% 22.9%
5g5gA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.52 44.0 3.83e-01 100.0% 87.8%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.51 38.0 2.80e-01 85.7% 74.3%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 37.0 3.16e-01 78.6% 52.1%
2qkdA04 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.50 39.0 3.20e-01 92.9% 60.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3966798 4019.1.1.4 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S13 0.59 45.0 3.75e-01 82.1% 68.4%
3239980 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 46.0 2.94e-01 100.0% 71.3%
3960905 604.10.1.4 alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac › CstA 0.53 43.0 3.28e-01 89.3% 38.5%
3218621 108.1.1.164 alpha arrays › EF-hand › EF-hand-related › EF-hand › PF30347 0.53 43.0 3.16e-01 94.6% 53.7%
56710 150.3.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine 0.53 45.0 3.50e-01 98.2% 45.8%
4540145 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.51 42.0 3.35e-01 91.1% 58.3%