Back to structures

LN681536.1__CEK40371.1__PHICD146_20042__00042

Bact-Vir

LN681536.1__CEK40371.1__PHICD146_20042__00042

Identity

Accession:
LN681536 ↗
Kingdom:
phage

Quality

89.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-50
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.73 53.0 4.09e-01 78.7% 37.7%
2azeB00 6.10.250.540 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 39.0 3.05e-01 78.7% 24.8%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.67 57.0 3.20e-01 97.9% 8.8%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.64 52.0 4.99e-01 100.0% 76.4%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.62 47.0 4.05e-01 89.4% 54.7%
2b0aA00 3.50.30.50 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase 0.62 41.0 2.70e-01 78.7% 17.2%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.61 49.0 4.05e-01 91.5% 63.3%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.60 42.0 3.69e-01 100.0% 46.1%
2v1xA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 40.0 3.13e-01 70.2% 56.4%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.59 48.0 2.79e-01 95.7% 9.5%
1zkkB00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.59 45.0 3.18e-01 87.2% 29.8%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.58 45.0 3.64e-01 89.4% 84.7%
5wy8B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 3.34e-01 78.7% 92.9%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 38.0 2.61e-01 70.2% 88.9%
3c18A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 46.0 3.57e-01 100.0% 60.0%
4uhvA02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.56 42.0 3.59e-01 91.5% 78.3%
4aurA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 38.0 2.38e-01 74.5% 21.4%
4bq6F00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 39.0 2.82e-01 78.7% 96.6%
4c0kA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 37.0 2.49e-01 72.3% 47.0%
1h0hB01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 3.10e-01 93.6% 96.7%
1ti2B01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 3.22e-01 93.6% 85.7%
1fltX00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.06e-01 76.6% 87.4%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 38.0 3.14e-01 78.7% 80.0%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.00e-01 78.7% 58.0%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.00e-01 78.7% 61.4%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.00e-01 78.7% 77.8%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.41e-01 83.0% 81.8%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.04e-01 78.7% 67.6%
1z2aA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 2.94e-01 93.6% 67.7%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.52 36.0 2.30e-01 74.5% 50.5%
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.52 42.0 3.08e-01 97.9% 82.1%
1vb5B02 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.52 35.0 2.44e-01 72.3% 31.5%
5ksoA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 40.0 2.86e-01 93.6% 65.1%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.51 40.0 2.55e-01 100.0% 36.3%
2v8qB00 6.20.250.60 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.51 39.0 3.41e-01 85.1% 61.6%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 35.0 2.88e-01 74.5% 63.1%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.51 35.0 2.68e-01 76.6% 68.7%
5h7kA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 2.63e-01 93.6% 34.7%
1ryhA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 40.0 2.83e-01 93.6% 57.3%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.01e-01 83.0% 64.8%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3307915 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.87 68.0 6.10e-01 89.4% 61.5%
5066586 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.82 72.0 7.08e-01 97.9% 92.0%
3482807 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.81 54.0 4.13e-01 70.2% 30.6%
4120496 377.1.1.8 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e 0.81 66.0 5.67e-01 91.5% 57.3%
3262982 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 63.0 6.47e-01 93.6% 100.0%
3619859 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.75 54.0 4.06e-01 78.7% 30.8%
5053880 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.75 60.0 6.16e-01 91.5% 91.1%
3308238 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.71 55.0 5.79e-01 89.4% 100.0%
3234939 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.71 59.0 5.35e-01 100.0% 67.7%
3489390 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 61.0 5.16e-01 100.0% 62.5%
5051696 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.71 54.0 5.17e-01 85.1% 76.4%
5079277 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.69 48.0 4.57e-01 97.9% 60.3%
4997007 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 56.0 4.94e-01 91.5% 61.4%
3784386 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.64 52.0 5.31e-01 91.5% 93.3%
3738675 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 54.0 4.13e-01 100.0% 74.8%
2035461 3380.1.1.1 a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 0.63 51.0 4.86e-01 100.0% 75.0%
3181300 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 3.92e-01 100.0% 60.7%
4986319 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.63 47.0 4.71e-01 100.0% 80.0%
5043001 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.62 45.0 3.52e-01 78.7% 60.0%
3727444 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.06e-01 97.9% 78.2%
3635393 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 54.0 3.96e-01 100.0% 64.6%
3657246 101.1.2.525 alpha arrays › HTH › HTH › winged helix domain › DUF7646 0.62 49.0 4.15e-01 100.0% 80.0%
3200375 101.1.2.569 alpha arrays › HTH › HTH › winged helix domain › PF28722 0.61 53.0 3.32e-01 100.0% 31.6%
4983310 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.61 44.0 3.52e-01 78.7% 68.0%
4946426 3241.1.1.0 alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 0.61 45.0 2.93e-01 80.9% 58.1%
3167819 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 3.91e-01 89.4% 90.0%
3785947 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.60 41.0 3.10e-01 72.3% 55.2%
4293536 4232.1.1.0 few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.59 45.0 4.43e-01 97.9% 80.0%
4955560 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.59 43.0 4.15e-01 100.0% 69.1%
3577341 2004.1.1.47 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › G-alpha 0.59 41.0 2.71e-01 74.5% 27.5%
2791115 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 39.0 3.11e-01 70.2% 56.4%
5071263 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 3.45e-01 78.7% 71.1%
3585355 376.1.1.72 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › EHMT1-2_CRR 0.58 47.0 3.82e-01 97.9% 50.0%
3269923 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.57 44.0 2.91e-01 89.4% 59.6%
3644266 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 39.0 3.20e-01 72.3% 55.0%
4947503 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 40.0 2.85e-01 76.6% 43.1%
5044327 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 40.0 3.27e-01 78.7% 65.0%
4026917 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.56 38.0 3.83e-01 74.5% 72.0%
3810002 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.55 38.0 3.05e-01 72.3% 50.0%
5041315 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 41.0 3.33e-01 85.1% 70.0%
3725746 4001.1.1.4 a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.55 38.0 2.78e-01 72.3% 63.2%
4001237 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 3.45e-01 85.1% 55.0%
4009252 3371.1.1.2 few secondary structure elements › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › PF27493 0.55 45.0 4.43e-01 95.7% 92.0%
4939797 2007.13.1.1 a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domains in magnesium chelatase catalytic subunit › Rossmann-like domains in magnesium chelatase catalytic subunit › CobN-Mg_chel 0.55 38.0 2.63e-01 78.7% 72.4%
4026870 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.55 39.0 3.17e-01 83.0% 79.1%
3724091 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.54 41.0 2.66e-01 87.2% 52.5%
3977489 377.1.1.117 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF27493 0.54 45.0 4.51e-01 97.9% 94.0%
3989015 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.38e-01 93.6% 66.7%
1299892 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.54 38.0 2.99e-01 78.7% 66.7%
3750327 109.4.1.2865 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPOL_N 0.53 40.0 2.42e-01 89.4% 34.4%
5052474 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 38.0 3.10e-01 83.0% 65.7%
3690788 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.53 39.0 2.53e-01 87.2% 58.5%
3169173 3241.1.1.1 alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 0.53 38.0 2.40e-01 80.9% 51.6%
3587554 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 39.0 3.15e-01 83.0% 68.0%
4940950 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.52 37.0 3.23e-01 78.7% 90.0%
3402962 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.52 39.0 2.50e-01 87.2% 58.9%
3988732 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 37.0 2.97e-01 78.7% 60.2%
2409292 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 38.0 3.07e-01 85.1% 66.3%
5071269 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 38.0 2.60e-01 85.1% 35.7%
3998628 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 41.0 3.02e-01 100.0% 65.5%
5064203 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.09e-01 80.9% 76.7%
5008107 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.51 35.0 2.89e-01 74.5% 58.1%
3900298 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.51 39.0 2.56e-01 91.5% 61.2%
3550551 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.51 38.0 2.50e-01 87.2% 57.3%
4924547 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 36.0 3.39e-01 100.0% 58.5%
4505972 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.50 40.0 2.40e-01 87.2% 13.4%
4928190 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.50 35.0 3.15e-01 83.0% 76.2%
3484326 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.50 41.0 2.60e-01 100.0% 39.0%
5001284 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.50 36.0 2.65e-01 83.0% 45.0%