←Back to structures
LN828717.1__CFW42325.1__S-PM2d138__00110
Bact-VirLN828717.1__CFW42325.1__S-PM2d138__00110
Identity
- Accession:
- LN828717 ↗
- Kingdom:
- phage
Quality
85.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Nodensvirus›
Synechococcus_phage_S-PM2
TaxID: 238854
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 55-129_169-205
Domain cluster:
rep: IMGVR_UViG_3300028570_000114-3300028570-Ga0255341_100537417__D1-54_87-134
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19782.5 best | DUF6267 | 119.9 | 2.40e-34 | 69.6% | 19.1% |
D2
high
residues 410-590
Domain cluster:
rep: hypothetical_protein_OtV5_111c__YP_001648198__Ostreococcus_tauri_virus_OtV5__1785753__DFULL
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01467.33 best | CTP_transf_like | 32.0 | 1.70e-07 | 79.0% | 98.5% |
D3
medium
residues 1-51_206-237_371-386
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19782.5 best | DUF6267 | 30.7 | 3.10e-07 | 50.5% | 12.0% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.68 | 45.0 | 4.40e-01 | 76.8% | 62.0% |
| 3dbaA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.58 | 41.0 | 3.38e-01 | 72.7% | 94.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3348024 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.61 | 46.0 | 3.98e-01 | 78.8% | 71.3% |
| 3261882 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 42.0 | 2.52e-01 | 78.8% | 12.5% |
| 4139338 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.52 | 38.0 | 2.56e-01 | 78.8% | 89.8% |
| 3742022 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.52 | 41.0 | 2.93e-01 | 83.8% | 30.5% |
| 3922622 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 38.0 | 2.88e-01 | 77.8% | 64.2% |