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LN881738.1__CUL03855.1__X__00051
Bact-VirLN881738.1__CUL03855.1__X__00051
Identity
- Accession:
- LN881738 ↗
- Kingdom:
- phage
Quality
74.8
mean pLDDT
Taxonomy
TaxID: 1720506
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 424-486
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7snsB01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.81 | 62.0 | 4.50e-01 | 81.0% | 32.1% |
| 2gc9B00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.78 | 64.0 | 4.70e-01 | 88.9% | 63.4% |
| 2w7qB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.77 | 65.0 | 4.58e-01 | 90.5% | 84.4% |
| 4avaA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.76 | 55.0 | 3.89e-01 | 76.2% | 49.2% |
| 2hqyA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.74 | 52.0 | 3.79e-01 | 73.0% | 53.6% |
| 1p32B00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.74 | 64.0 | 4.64e-01 | 95.2% | 39.2% |
| 5f47B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.73 | 51.0 | 3.84e-01 | 73.0% | 57.2% |
| 4iusA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.73 | 51.0 | 3.34e-01 | 73.0% | 28.4% |
| 7b3aA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.72 | 50.0 | 3.77e-01 | 73.0% | 48.3% |
| 2bhoA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.71 | 58.0 | 4.79e-01 | 88.9% | 75.5% |
| 1xf8A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.70 | 49.0 | 3.60e-01 | 73.0% | 50.3% |
| 3pcrA01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.69 | 57.0 | 4.99e-01 | 90.5% | 93.6% |
| 3frmA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.69 | 48.0 | 3.18e-01 | 73.0% | 31.7% |
| 4ifaA01 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.68 | 53.0 | 3.45e-01 | 84.1% | 41.6% |
| 4gq1A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.67 | 54.0 | 3.40e-01 | 88.9% | 54.5% |
| 1a87A01 | 3.30.1120.60 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin | 0.66 | 56.0 | 4.89e-01 | 96.8% | 66.0% |
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.65 | 47.0 | 4.42e-01 | 76.2% | 62.3% |
| 1oh1A00 | 2.40.310.10 | Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors | 0.64 | 53.0 | 4.45e-01 | 92.1% | 81.7% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.62 | 56.0 | 5.19e-01 | 100.0% | 91.0% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 48.0 | 4.24e-01 | 93.7% | 57.8% |
| 1nycA00 | 2.40.310.10 | Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors | 0.61 | 50.0 | 4.24e-01 | 93.7% | 76.6% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.61 | 49.0 | 4.58e-01 | 90.5% | 71.2% |
| 3ap9A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 50.0 | 3.78e-01 | 90.5% | 68.9% |
| 2hesX00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 50.0 | 3.20e-01 | 95.2% | 39.3% |
| 1xksA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 50.0 | 3.14e-01 | 100.0% | 24.9% |
| 3owcB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 45.0 | 3.27e-01 | 84.1% | 71.8% |
| 3kstA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 47.0 | 3.17e-01 | 98.4% | 49.5% |
| 2fhxA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 49.0 | 3.34e-01 | 100.0% | 76.3% |
| 1yreC00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 45.0 | 3.27e-01 | 93.7% | 68.7% |
| 6wqbA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 46.0 | 3.67e-01 | 100.0% | 80.0% |
| 4fdtB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.53 | 42.0 | 2.58e-01 | 85.7% | 62.6% |
| 3ld2B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 45.0 | 3.40e-01 | 96.8% | 74.7% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3240229 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.86 | 67.0 | 4.24e-01 | 82.5% | 18.9% |
| 3990496 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.86 | 68.0 | 6.56e-01 | 84.1% | 78.6% |
| 3499681 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.81 | 69.0 | 5.97e-01 | 92.1% | 65.6% |
| 3218632 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.81 | 75.0 | 6.43e-01 | 100.0% | 83.0% |
| 3512069 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.81 | 73.0 | 5.06e-01 | 100.0% | 43.0% |
| 3740898 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.80 | 58.0 | 3.68e-01 | 76.2% | 40.3% |
| 3365419 | 5.3.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop | 0.80 | 58.0 | 4.39e-01 | 76.2% | 100.0% |
| 3229011 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.79 | 62.0 | 4.68e-01 | 84.1% | 40.0% |
| 3599747 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.79 | 58.0 | 3.60e-01 | 77.8% | 41.2% |
| 4380331 | 295.1.1.27 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 | 0.79 | 64.0 | 6.19e-01 | 87.3% | 84.3% |
| 3062889 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.78 | 64.0 | 4.55e-01 | 87.3% | 32.2% |
| 4423405 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.77 | 54.0 | 3.91e-01 | 73.0% | 50.9% |
| 3607499 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.77 | 59.0 | 4.39e-01 | 79.4% | 77.7% |
| 4324615 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.76 | 68.0 | 5.06e-01 | 100.0% | 41.9% |
| 4962916 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.75 | 56.0 | 4.02e-01 | 79.4% | 53.1% |
| 3616330 | 77.3.1.4 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 | 0.75 | 60.0 | 4.66e-01 | 98.4% | 40.7% |
| 3703246 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.75 | 58.0 | 4.83e-01 | 84.1% | 80.9% |
| 3952442 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.74 | 51.0 | 3.98e-01 | 71.4% | 64.6% |
| 5057541 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.74 | 57.0 | 4.18e-01 | 82.5% | 60.6% |
| 3231343 | 77.1.1.10 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28998 | 0.74 | 61.0 | 4.78e-01 | 98.4% | 43.1% |
| 1097232 | 3180.1.1.1 ↗ | a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG | 0.74 | 56.0 | 4.67e-01 | 85.7% | 47.7% |
| 3473012 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.74 | 66.0 | 4.17e-01 | 98.4% | 71.8% |
| 4307607 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.73 | 65.0 | 4.38e-01 | 100.0% | 29.6% |
| 3781872 | 213.1.1.53 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_6 | 0.73 | 51.0 | 3.18e-01 | 73.0% | 26.7% |
| 4166611 | 213.1.1.10 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Leu_Phe_trans | 0.73 | 52.0 | 3.47e-01 | 74.6% | 34.6% |
| 3973692 | 213.1.1.51 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB_like | 0.73 | 51.0 | 3.50e-01 | 73.0% | 42.4% |
| 3399544 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.73 | 54.0 | 3.46e-01 | 79.4% | 17.7% |
| 3339690 | 9.23.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 | 0.71 | 62.0 | 4.85e-01 | 96.8% | 61.5% |
| 3794101 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.71 | 63.0 | 4.38e-01 | 100.0% | 39.0% |
| 4945872 | 213.1.1.19 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 | 0.70 | 48.0 | 3.51e-01 | 71.4% | 46.7% |
| 1833186 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.69 | 48.0 | 3.63e-01 | 73.0% | 53.0% |
| 4345013 | 4998.1.1.1 ↗ | beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 | 0.69 | 56.0 | 4.19e-01 | 88.9% | 56.2% |
| 3802207 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.69 | 53.0 | 3.35e-01 | 82.5% | 31.7% |
| 4024970 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.67 | 55.0 | 3.27e-01 | 88.9% | 44.0% |
| 3653236 | 3347.1.1.0 ↗ | beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 | 0.67 | 58.0 | 4.38e-01 | 100.0% | 53.8% |
| 3620401 | 63.1.1.3 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH | 0.66 | 53.0 | 4.21e-01 | 88.9% | 62.3% |
| 3934097 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.65 | 58.0 | 4.47e-01 | 100.0% | 64.3% |
| 3291683 | 4221.1.1.0 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like | 0.65 | 56.0 | 5.00e-01 | 96.8% | 95.6% |
| 867 | 9.6.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Staphostatin › Staphostatin › Staphostatin_A | 0.64 | 53.0 | 4.45e-01 | 92.1% | 81.7% |
| 3846927 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 45.0 | 3.87e-01 | 73.0% | 57.9% |
| 3927330 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.64 | 49.0 | 4.49e-01 | 84.1% | 83.5% |
| 3603162 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.62 | 49.0 | 4.38e-01 | 85.7% | 80.0% |
| 3448363 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.62 | 50.0 | 3.45e-01 | 88.9% | 66.1% |
| 3604446 | 2004.1.1.480 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 | 0.61 | 47.0 | 2.73e-01 | 84.1% | 19.4% |
| 3785052 | 213.1.1.62 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ATE_N+ATE_C | 0.61 | 56.0 | 3.33e-01 | 100.0% | 27.0% |
| 4162926 | 241.1.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT | 0.60 | 53.0 | 4.21e-01 | 100.0% | 80.8% |
| 4990576 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.58 | 50.0 | 3.85e-01 | 96.8% | 95.9% |
| 3286529 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.58 | 50.0 | 3.74e-01 | 96.8% | 90.5% |
| 3624850 | 331.9.1.9 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 | 0.57 | 49.0 | 4.12e-01 | 93.7% | 81.9% |
| 4029696 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.57 | 48.0 | 3.62e-01 | 93.7% | 98.7% |
| 3287547 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.57 | 50.0 | 3.77e-01 | 100.0% | 96.1% |
| 5022814 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.54 | 48.0 | 4.58e-01 | 100.0% | 84.0% |
| 3838466 | 1.1.10.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) › FliMN_C | 0.52 | 37.0 | 3.48e-01 | 74.6% | 87.5% |
D2
medium
residues 1-61
Domain cluster:
representative
D3
medium
residues 64-145
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d4tA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.71 | 49.0 | 4.52e-01 | 70.7% | 56.7% |
| 1rjaA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.69 | 47.0 | 4.45e-01 | 70.7% | 60.0% |
| 2dx0A00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.68 | 47.0 | 4.14e-01 | 72.0% | 56.4% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 44.0 | 4.18e-01 | 85.4% | 64.0% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.60 | 40.0 | 3.58e-01 | 70.7% | 65.4% |
| 2izvA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 47.0 | 3.80e-01 | 90.2% | 87.1% |
| 2i5bA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.57 | 39.0 | 2.84e-01 | 73.2% | 43.1% |
| 1ti2A01 | 2.20.25.340 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.57 | 39.0 | 4.19e-01 | 70.7% | 87.9% |
| 1peaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 38.0 | 3.01e-01 | 70.7% | 33.5% |
| 3i45A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 38.0 | 3.00e-01 | 73.2% | 36.7% |
| 2cxhA01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.53 | 43.0 | 3.37e-01 | 87.8% | 98.9% |
| 3ei3B02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 37.0 | 2.60e-01 | 75.6% | 49.4% |
| 6em3x01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.51 | 35.0 | 2.74e-01 | 70.7% | 47.0% |
| 1tm0A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.50 | 40.0 | 3.31e-01 | 90.2% | 65.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3995638 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.69 | 47.0 | 3.98e-01 | 70.7% | 46.2% |
| 3629993 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.68 | 47.0 | 4.16e-01 | 72.0% | 57.5% |
| 3947985 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.67 | 52.0 | 5.61e-01 | 96.3% | 98.6% |
| 3389857 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.66 | 47.0 | 3.93e-01 | 85.4% | 43.6% |
| 4943282 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.65 | 44.0 | 3.41e-01 | 70.7% | 48.9% |
| 3903512 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.63 | 50.0 | 4.31e-01 | 85.4% | 55.2% |
| 3516336 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.63 | 46.0 | 3.96e-01 | 86.6% | 48.5% |
| 3557314 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.62 | 46.0 | 3.87e-01 | 86.6% | 46.7% |
| 3545796 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.62 | 45.0 | 4.03e-01 | 85.4% | 54.8% |
| 4488523 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.62 | 43.0 | 2.99e-01 | 73.2% | 41.1% |
| 3486812 | 101.1.12.3 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N | 0.60 | 41.0 | 3.36e-01 | 70.7% | 91.6% |
| 3739545 | 874.1.1.0 ↗ | a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain | 0.58 | 50.0 | 3.37e-01 | 96.3% | 23.6% |
| 3415161 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.58 | 50.0 | 3.51e-01 | 98.8% | 61.5% |
| 4977600 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.55 | 45.0 | 3.46e-01 | 87.8% | 96.1% |
| 4413343 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.53 | 36.0 | 2.60e-01 | 72.0% | 27.0% |
| 3657704 | 5.1.5.54 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NOL10_N | 0.53 | 37.0 | 3.22e-01 | 84.1% | 43.6% |
| 3847094 | 5.1.5.102 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › OLF | 0.52 | 36.0 | 2.62e-01 | 74.4% | 46.7% |
| 3510537 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.51 | 35.0 | 2.87e-01 | 72.0% | 51.7% |
| 3999576 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.51 | 34.0 | 2.90e-01 | 70.7% | 42.8% |
D4
medium
residues 190-253
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3td9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 45.0 | 3.41e-01 | 95.3% | 33.8% |
| 4maaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 47.0 | 3.51e-01 | 95.3% | 34.7% |
| 6p8uA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.58 | 39.0 | 3.08e-01 | 70.3% | 66.0% |
| 2ot9A01 | 3.10.640.10 | Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain | 0.56 | 39.0 | 2.79e-01 | 71.9% | 93.8% |
| 4omfB02 | 3.10.450.750 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 28.0 | 3.18e-01 | 70.3% | 57.4% |
| 1pvdA02 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.55 | 37.0 | 2.81e-01 | 70.3% | 71.4% |
| 4bjyA02 | 3.30.9.30 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.52 | 40.0 | 2.79e-01 | 85.9% | 50.7% |
| 4gnrA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 44.0 | 3.44e-01 | 98.4% | 52.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3214951 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.69 | 49.0 | 3.63e-01 | 96.9% | 30.0% |
| 1883379 | 1103.1.1.1 ↗ | mixed a+b and a/b › uncharacterized protein LPG2148 insertion domain › uncharacterized protein LPG2148 insertion domain › uncharacterized protein LPG2148 insertion domain › MvcA_ins | 0.69 | 46.0 | 4.12e-01 | 73.4% | 48.9% |
| 1922245 | 1103.1.1.1 ↗ | mixed a+b and a/b › uncharacterized protein LPG2148 insertion domain › uncharacterized protein LPG2148 insertion domain › uncharacterized protein LPG2148 insertion domain › MvcA_ins | 0.67 | 45.0 | 3.96e-01 | 73.4% | 45.5% |
| 5068098 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.60 | 43.0 | 3.18e-01 | 76.6% | 70.9% |
| 3164741 | 506.2.1.1 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UB2H | 0.59 | 40.0 | 3.69e-01 | 70.3% | 57.5% |
| 4256884 | 506.2.1.2 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter | 0.57 | 38.0 | 3.44e-01 | 70.3% | 64.4% |
| 3809605 | 11.1.4.55 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Self-incomp_S1 | 0.56 | 38.0 | 3.21e-01 | 70.3% | 100.0% |
| 5051212 | 506.2.1.2 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter | 0.54 | 36.0 | 3.29e-01 | 70.3% | 65.6% |
| 5048316 | 2004.1.1.1221 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27431 | 0.52 | 46.0 | 2.82e-01 | 100.0% | 30.9% |
| 4973207 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.52 | 44.0 | 2.81e-01 | 100.0% | 25.1% |
| 4382986 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.51 | 44.0 | 3.09e-01 | 100.0% | 43.2% |
| 3936024 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 35.0 | 2.21e-01 | 71.9% | 23.5% |
| 5001934 | 2004.1.1.554 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrB_inter | 0.50 | 43.0 | 2.68e-01 | 100.0% | 30.5% |
D5
medium
residues 262-313
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5exvC00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.55 | 38.0 | 2.76e-01 | 76.9% | 68.5% |
| 4ytlA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 29.0 | 2.96e-01 | 80.8% | 48.0% |
| 2elbA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 40.0 | 3.24e-01 | 82.7% | 44.1% |
| 5uc6A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.52 | 43.0 | 3.19e-01 | 96.2% | 92.1% |
| 2vrwB02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 41.0 | 3.24e-01 | 92.3% | 67.8% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 42.0 | 3.62e-01 | 90.4% | 100.0% |
| 1wguA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 40.0 | 3.11e-01 | 88.5% | 53.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5066674 | 3111.1.1.0 ↗ | beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain | 0.62 | 44.0 | 3.55e-01 | 84.6% | 35.7% |
| 4964626 | 101.1.2.931 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7528 | 0.62 | 36.0 | 2.70e-01 | 88.5% | 23.1% |
| 3302115 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.58 | 49.0 | 3.10e-01 | 100.0% | 45.2% |
| 3717769 | 2498.1.1.14 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 | 0.56 | 47.0 | 2.78e-01 | 100.0% | 24.2% |
| 5022798 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 40.0 | 2.33e-01 | 78.8% | 18.6% |
| 3591100 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.55 | 47.0 | 2.85e-01 | 100.0% | 22.7% |
| 3300781 | 5.1.4.226 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7899 | 0.53 | 43.0 | 2.93e-01 | 100.0% | 57.1% |
| 3859895 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.51 | 39.0 | 2.39e-01 | 86.5% | 21.1% |
| 3562938 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 39.0 | 3.03e-01 | 86.5% | 63.2% |
| 3579494 | 5.1.5.171 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Str_synth | 0.51 | 40.0 | 2.67e-01 | 100.0% | 33.5% |
| 3577912 | 375.1.1.202 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A | 0.50 | 33.0 | 3.36e-01 | 78.8% | 72.0% |