←Back to structures

LN885237.1__CUQ99439.1__BN20_016__00016

Bact-Vir

LN885237.1__CUQ99439.1__BN20_016__00016

Identity

Accession:
LN885237 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_EV3

TaxID: 980881

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-96
PDB
Domain cluster: rep: IMGVR_UViG_3300001784_000289-3300001784-JGI20225J20221_10000041414__D5-96
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18994.7 best Prophage_tailD1 66.0 3.80e-18 96.7% 97.6%
D2 high residues 407-592
PDB
Domain cluster: rep: term1_saliva_scaffold_14_prodigal-single.1__X__X__00263__D156-334
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01183.27 best Glyco_hydro_25 102.8 4.10e-29 91.4% 96.7%
D3 medium residues 101-181
PDB
Domain cluster: rep: OP142323.1__UVD33254.1__X__00017__D443-515
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26674.1 best Prophage_tail_N2 41.9 1.50e-10 92.6% 96.0%
D4 medium residues 281-357
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.80 59.0 4.46e-01 77.9% 37.9%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.72 56.0 5.22e-01 88.3% 67.4%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 39.0 4.44e-01 70.1% 71.2%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.70 56.0 4.92e-01 88.3% 59.5%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.69 47.0 4.56e-01 89.6% 62.8%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.69 50.0 4.68e-01 75.3% 64.5%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.68 46.0 4.41e-01 84.4% 60.4%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.68 48.0 4.33e-01 74.0% 59.6%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 57.0 4.83e-01 93.5% 59.8%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.66 48.0 4.85e-01 77.9% 77.2%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 50.0 4.71e-01 85.7% 67.0%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 40.0 4.01e-01 70.1% 60.0%
1agjA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 45.0 4.08e-01 74.0% 63.9%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.63 51.0 4.59e-01 89.6% 63.8%
5xgbA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 46.0 3.99e-01 77.9% 89.0%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 49.0 4.35e-01 85.7% 70.6%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.61 55.0 4.20e-01 97.4% 61.4%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 35.0 3.50e-01 71.4% 53.8%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.61 47.0 3.97e-01 81.8% 89.5%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.61 48.0 4.54e-01 87.0% 70.5%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 51.0 4.25e-01 96.1% 59.9%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 42.0 3.75e-01 77.9% 93.8%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 39.0 3.54e-01 72.7% 92.7%
2b9wA03 3.30.70.1990 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 4.02e-01 90.9% 68.4%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 40.0 3.63e-01 77.9% 100.0%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 37.0 3.17e-01 70.1% 64.7%
1r3eA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.55 39.0 2.91e-01 75.3% 48.9%
4cvuA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 36.0 2.77e-01 85.7% 26.1%
3c8cB02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 38.0 3.40e-01 72.7% 74.3%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 41.0 3.85e-01 81.8% 99.0%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 41.0 3.83e-01 79.2% 95.8%
3by8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 40.0 3.45e-01 80.5% 63.2%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 3.78e-01 84.4% 67.0%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 44.0 4.03e-01 90.9% 68.6%
4hoiB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 39.0 3.48e-01 77.9% 96.5%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 39.0 3.80e-01 89.6% 68.6%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 36.0 3.45e-01 72.7% 81.8%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.52 33.0 2.94e-01 80.5% 44.1%
1w99A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.52 39.0 3.06e-01 83.1% 100.0%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.73e-01 87.0% 69.9%
1wvhA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.19e-01 79.2% 89.4%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.51 41.0 3.84e-01 94.8% 74.0%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031753 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.83 62.0 5.73e-01 77.9% 63.2%
4033372 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 59.0 5.16e-01 76.6% 60.9%
5041375 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 58.0 5.47e-01 77.9% 65.6%
3970827 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 54.0 5.26e-01 74.0% 75.3%
5034906 205.1.1.16 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.75 52.0 4.09e-01 85.7% 35.9%
3973341 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 54.0 5.25e-01 77.9% 68.2%
3590379 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 53.0 5.03e-01 74.0% 74.4%
4647050 1.1.13.56 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.73 53.0 5.30e-01 76.6% 73.8%
3589736 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 54.0 5.70e-01 79.2% 92.9%
3590201 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 53.0 4.69e-01 79.2% 54.6%
3970513 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.71 49.0 4.80e-01 71.4% 68.2%
5013322 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.70 53.0 5.55e-01 85.7% 87.1%
3974181 1.1.5.88 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 0.69 50.0 4.81e-01 87.0% 65.6%
5049368 205.1.1.1 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.69 51.0 4.07e-01 84.4% 40.0%
4072524 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.69 53.0 4.67e-01 87.0% 57.3%
4299010 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 51.0 4.80e-01 84.4% 64.2%
3387966 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 49.0 4.80e-01 75.3% 70.6%
3968432 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 58.0 5.18e-01 93.5% 66.7%
4943219 205.1.1.123 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer2_BFD 0.68 51.0 3.98e-01 84.4% 38.7%
3256920 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 56.0 4.78e-01 89.6% 55.2%
4608778 1.1.7.107 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.68 51.0 4.38e-01 84.4% 50.8%
159 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.68 46.0 4.37e-01 83.1% 60.0%
3968971 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.67 53.0 5.05e-01 89.6% 72.2%
3535347 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 52.0 4.55e-01 83.1% 71.3%
3949052 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 50.0 4.73e-01 84.4% 67.8%
3219406 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 40.0 4.89e-01 70.1% 96.0%
3909822 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 52.0 4.59e-01 84.4% 73.6%
5064178 1.1.13.73 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PUA 0.65 46.0 5.05e-01 79.2% 93.3%
4565791 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.65 50.0 4.79e-01 84.4% 71.1%
3702149 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 52.0 4.06e-01 87.0% 44.4%
3166182 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.64 50.0 4.75e-01 85.7% 71.1%
5055336 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.64 49.0 4.68e-01 88.3% 71.1%
3206575 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.64 47.0 4.17e-01 84.4% 54.5%
3732753 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.64 45.0 4.26e-01 76.6% 62.2%
4260084 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 53.0 4.59e-01 92.2% 90.0%
3597995 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 47.0 4.24e-01 88.3% 56.4%
4342567 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 52.0 4.57e-01 94.8% 60.9%
4966530 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.61 46.0 4.79e-01 89.6% 90.0%
3837954 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.61 46.0 4.34e-01 85.7% 66.3%
5012955 1.1.7.128 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF515 0.60 48.0 4.65e-01 85.7% 78.8%
4327412 1.1.8.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel 0.60 47.0 4.67e-01 90.9% 80.0%
5036917 304.102.1.13 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.59 41.0 3.43e-01 74.0% 50.7%
4980703 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 45.0 3.78e-01 83.1% 77.1%
3516283 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.59 42.0 4.37e-01 83.1% 82.9%
4927410 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.58 41.0 3.01e-01 75.3% 31.1%
4646504 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.58 41.0 3.14e-01 75.3% 46.0%
5058386 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.58 40.0 3.16e-01 75.3% 40.5%
4952012 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 42.0 2.87e-01 80.5% 28.5%
3687001 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 42.0 3.51e-01 79.2% 85.0%
4223490 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.56 40.0 2.97e-01 75.3% 36.3%
3968498 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 38.0 3.13e-01 70.1% 69.3%
3945834 1.1.7.79 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND 0.56 44.0 4.05e-01 85.7% 70.0%
3263394 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.55 47.0 3.98e-01 97.4% 56.2%
4126423 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.55 39.0 2.92e-01 75.3% 42.3%
3930463 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.54 41.0 3.81e-01 81.8% 94.0%
4935771 304.8.1.121 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Pus10_C 0.53 43.0 3.08e-01 90.9% 38.4%
3696762 11.1.1.965 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26150 0.53 44.0 3.89e-01 100.0% 60.8%
4503008 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.53 42.0 3.20e-01 89.6% 45.0%
3212174 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.53 40.0 3.89e-01 89.6% 74.1%
5053150 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 42.0 3.41e-01 90.9% 95.5%
3428351 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.52 41.0 3.15e-01 89.6% 38.5%
5001314 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.52 40.0 2.88e-01 85.7% 31.4%
3275260 331.4.1.6 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › DEPDC5_CTD 0.52 39.0 3.64e-01 87.0% 65.3%
3514909 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 39.0 2.65e-01 81.8% 50.0%
3929223 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.20e-01 85.7% 98.8%
5018860 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.51 37.0 2.96e-01 76.6% 69.3%
3625217 223.2.1.37 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.51 41.0 3.11e-01 92.2% 78.5%