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LN890663.1__CUS06499.1__X__00038

Bact-Vir

LN890663.1__CUS06499.1__X__00038

Identity

Accession:
LN890663 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lokivirus› Acinetobacter_phage_Loki

TaxID: 1970374

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-101
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iteA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 48.0 4.57e-01 77.0% 96.7%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 40.0 4.50e-01 74.0% 90.8%
2qxlB05 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.60 47.0 4.31e-01 83.0% 86.6%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.59 44.0 4.69e-01 100.0% 88.8%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 4.55e-01 100.0% 94.7%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.56 43.0 4.41e-01 83.0% 83.8%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 3.57e-01 74.0% 91.0%
1cgtA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.93e-01 71.0% 80.2%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.55 48.0 4.54e-01 98.0% 89.4%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.53 45.0 4.46e-01 100.0% 88.7%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.53 40.0 3.55e-01 82.0% 71.1%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.53 44.0 4.44e-01 100.0% 92.9%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.53 46.0 3.90e-01 100.0% 91.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 46.0 4.25e-01 100.0% 91.9%
3db2B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 46.0 3.71e-01 100.0% 83.3%
5lohB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 32.0 3.65e-01 96.0% 83.8%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.52 42.0 3.57e-01 87.0% 69.5%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 46.0 4.21e-01 100.0% 91.8%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.31e-01 90.0% 56.8%
2w4oA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 31.0 3.52e-01 98.0% 80.5%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.51 43.0 3.81e-01 100.0% 74.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3439826 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 45.0 3.98e-01 85.0% 71.3%
3417002 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 45.0 4.23e-01 83.0% 82.5%
3492352 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 43.0 4.28e-01 100.0% 77.1%
3456369 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.56 42.0 3.49e-01 83.0% 43.2%
3508903 243.1.1.12 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.55 48.0 4.81e-01 98.0% 94.3%
2774111 12.6.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.55 39.0 4.31e-01 99.0% 93.6%
3682029 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 43.0 3.48e-01 85.0% 46.8%
3331262 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.54 38.0 3.94e-01 80.0% 78.9%
4879299 219.1.1.45 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Mac-1 0.53 45.0 3.47e-01 93.0% 90.9%
3489236 243.1.1.12 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.53 46.0 4.62e-01 97.0% 94.3%
4430862 9.28.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Barrel domain in extracellular arabinanase › Barrel domain in extracellular arabinanase › GH43_C 0.53 43.0 4.33e-01 100.0% 87.6%
4042581 4.1.1.161 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4178 0.53 43.0 3.76e-01 90.0% 87.1%
3623487 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 42.0 3.05e-01 93.0% 93.3%
1498253 12.6.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.51 37.0 4.13e-01 98.0% 100.0%
4116610 243.3.1.52 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.50 39.0 3.75e-01 83.0% 74.8%
2832186 59.1.3.2 ↗ beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_polI_A34 0.50 38.0 3.35e-01 91.0% 53.6%