←Back to structures
LO8
Euk-VirRhynchobatus_djiddensis_adomavirus_1
LO8__YP_009552705__Rhynchobatus_djiddensis_adomavirus_1__2175117
Identity
- Accession:
- YP_009552705 ↗
- Protein ID:
- LO8
- Kingdom:
- euk
Quality
73.3
mean pLDDT
Cluster
View cluster (58 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-210
Domain cluster:
rep: ORF04R__YP_009252378__Marbled_eel_polyomavirus__1662286__D52-224
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ekfA00 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.76 | 68.0 | 6.73e-01 | 93.5% | 95.3% |
| 1th0B00 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.65 | 55.0 | 5.13e-01 | 88.6% | 79.8% |
| 1zbuB01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.52 | 22.0 | 3.29e-01 | 98.9% | 94.6% |
| 4jiuA00 | 3.30.2010.10 | Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" | 0.51 | 28.0 | 3.49e-01 | 74.5% | 87.6% |
| 3x3nA04 | 2.40.50.910 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Type VII secretion system EccB, repeat 3 domain | 0.50 | 23.0 | 3.34e-01 | 70.7% | 92.1% |
| 1toaA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.50 | 28.0 | 3.28e-01 | 81.5% | 75.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4360631 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.75 | 65.0 | 5.10e-01 | 91.3% | 59.7% |
| 3729399 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.70 | 60.0 | 5.28e-01 | 88.6% | 78.8% |
| 3415462 | 2003.6.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Carb_kinase | 0.54 | 42.0 | 3.63e-01 | 82.1% | 83.4% |
| 3956194 | 3708.1.1.1 ↗ | a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › T7SS_ESX1_EccB | 0.51 | 24.0 | 3.42e-01 | 71.2% | 95.3% |