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LO8
Euk-VirSymphysodon_discus_adomavirus_1
LO8__YP_009553060__Symphysodon_discus_adomavirus_1__2175118
Identity
- Accession:
- YP_009553060 ↗
- Protein ID:
- LO8
- Kingdom:
- euk
Quality
70.5
mean pLDDT
Cluster
View cluster (58 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 54-144
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1th0B00 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.74 | 68.0 | 5.06e-01 | 100.0% | 62.8% |
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.69 | 39.0 | 4.78e-01 | 82.4% | 92.7% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.67 | 41.0 | 5.00e-01 | 92.3% | 100.0% |
| 1wquA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.66 | 44.0 | 4.06e-01 | 98.9% | 53.5% |
| 2vouA02 | 3.30.9.60 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.64 | 46.0 | 3.91e-01 | 74.7% | 95.2% |
| 4k22A02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.63 | 46.0 | 4.34e-01 | 75.8% | 100.0% |
| 3i3lA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.63 | 49.0 | 3.18e-01 | 83.5% | 76.5% |
| 3e1tA02 | 3.30.9.100 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.61 | 48.0 | 4.00e-01 | 86.8% | 97.0% |
| 1dobA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.61 | 46.0 | 3.96e-01 | 81.3% | 77.0% |
| 5jgfA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.60 | 51.0 | 3.59e-01 | 97.8% | 78.1% |
| 2wesA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 46.0 | 2.91e-01 | 85.7% | 71.2% |
| 5nahA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 45.0 | 3.06e-01 | 86.8% | 71.0% |
| 1z01A02 | 2.20.25.680 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.57 | 35.0 | 4.16e-01 | 71.4% | 91.8% |
| 4bjyA02 | 3.30.9.30 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.57 | 45.0 | 3.42e-01 | 86.8% | 80.0% |
| 1b3mA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.55 | 47.0 | 3.81e-01 | 100.0% | 100.0% |
| 3b8bA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.54 | 48.0 | 4.02e-01 | 100.0% | 81.1% |
| 4ms4B02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 45.0 | 3.71e-01 | 96.7% | 74.4% |
| 1a1vA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 47.0 | 4.16e-01 | 98.9% | 80.7% |
| 4g41A00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.53 | 45.0 | 3.40e-01 | 95.6% | 79.2% |
| 1kaxA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.53 | 31.0 | 3.65e-01 | 95.6% | 92.7% |
| 2wylC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 45.0 | 3.26e-01 | 98.9% | 41.6% |
| 2i7tA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 44.0 | 3.33e-01 | 97.8% | 71.6% |
| 3eshA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 45.0 | 3.28e-01 | 95.6% | 72.1% |
| 1ym5A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.52 | 42.0 | 3.77e-01 | 90.1% | 80.9% |
| 4zo2A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 45.0 | 3.14e-01 | 94.5% | 55.3% |
| 2kcqA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 44.0 | 3.75e-01 | 95.6% | 88.2% |
| 3ctkA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.52 | 44.0 | 3.63e-01 | 94.5% | 66.5% |
| 1vjnA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 43.0 | 3.53e-01 | 100.0% | 51.5% |
| 4m0hA01 | 2.60.120.1440 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 41.0 | 3.67e-01 | 92.3% | 84.9% |
| 1p9eA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 43.0 | 3.04e-01 | 95.6% | 53.1% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3729399 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.72 | 66.0 | 4.74e-01 | 100.0% | 58.0% |
| 3236716 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.67 | 46.0 | 3.04e-01 | 70.3% | 54.6% |
| 3518947 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.67 | 45.0 | 4.11e-01 | 98.9% | 52.5% |
| 4052040 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.65 | 47.0 | 4.28e-01 | 76.9% | 98.4% |
| 3670208 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.64 | 50.0 | 3.24e-01 | 83.5% | 78.4% |
| 3960565 | 2003.1.3.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain | 0.64 | 52.0 | 3.58e-01 | 87.9% | 74.6% |
| 3425204 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.64 | 48.0 | 4.04e-01 | 80.2% | 89.0% |
| 3512462 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.63 | 42.0 | 3.83e-01 | 100.0% | 50.8% |
| 3679774 | 219.1.1.23 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB | 0.63 | 48.0 | 3.02e-01 | 82.4% | 29.6% |
| 3606763 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.62 | 50.0 | 3.65e-01 | 90.1% | 55.3% |
| 3519649 | 219.1.1.23 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB | 0.62 | 50.0 | 3.67e-01 | 90.1% | 65.3% |
| 2755323 | 219.1.1.23 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB | 0.61 | 49.0 | 3.65e-01 | 90.1% | 62.4% |
| 3801105 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.61 | 53.0 | 3.86e-01 | 96.7% | 86.5% |
| 3648094 | 219.1.1.23 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB | 0.61 | 49.0 | 3.55e-01 | 90.1% | 56.1% |
| 3609816 | 66.1.1.3 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox | 0.60 | 43.0 | 3.64e-01 | 73.6% | 93.8% |
| 4299015 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.60 | 43.0 | 3.85e-01 | 76.9% | 92.6% |
| 3596855 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.60 | 43.0 | 3.62e-01 | 73.6% | 92.4% |
| 4089905 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.60 | 43.0 | 4.12e-01 | 76.9% | 100.0% |
| 3397916 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.59 | 51.0 | 2.93e-01 | 94.5% | 30.3% |
| 3618603 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.59 | 50.0 | 3.62e-01 | 98.9% | 80.0% |
| 3931513 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.58 | 46.0 | 3.38e-01 | 86.8% | 88.0% |
| 4116968 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.55 | 47.0 | 4.02e-01 | 95.6% | 100.0% |
| 3438527 | 219.1.1.23 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB | 0.55 | 45.0 | 3.36e-01 | 92.3% | 100.0% |
| 3742327 | 2003.1.2.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO | 0.55 | 44.0 | 3.03e-01 | 89.0% | 67.8% |
| 4966211 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.55 | 43.0 | 3.77e-01 | 86.8% | 93.1% |
| 3871990 | 391.1.2.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC | 0.55 | 32.0 | 3.99e-01 | 71.4% | 96.4% |
| 3477642 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.54 | 41.0 | 3.75e-01 | 90.1% | 60.8% |
| 3386423 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.54 | 47.0 | 4.12e-01 | 96.7% | 89.3% |
| 4046575 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.54 | 43.0 | 3.97e-01 | 85.7% | 84.3% |
| 1174175 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.54 | 48.0 | 4.02e-01 | 100.0% | 81.1% |
| 3227340 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.54 | 42.0 | 3.56e-01 | 93.4% | 50.7% |
| 4995930 | 213.1.1.21 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C | 0.53 | 44.0 | 3.94e-01 | 92.3% | 68.9% |
| 3232262 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.53 | 38.0 | 3.60e-01 | 95.6% | 61.8% |
| 3899247 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.53 | 44.0 | 3.61e-01 | 94.5% | 83.2% |
| 4989790 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.53 | 45.0 | 3.70e-01 | 95.6% | 90.3% |
| 3729048 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 46.0 | 3.78e-01 | 100.0% | 90.0% |
| 1107970 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.53 | 43.0 | 3.91e-01 | 89.0% | 80.0% |
| 5021960 | 213.1.1.21 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C | 0.53 | 45.0 | 3.98e-01 | 92.3% | 70.8% |
| 4946362 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.52 | 45.0 | 3.55e-01 | 95.6% | 68.4% |
| 4020472 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.52 | 44.0 | 3.08e-01 | 98.9% | 75.9% |
| 4117010 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.52 | 42.0 | 3.99e-01 | 90.1% | 75.5% |
| 3518153 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.51 | 42.0 | 3.97e-01 | 87.9% | 85.5% |
| 3672067 | 219.1.1.23 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB | 0.51 | 43.0 | 3.31e-01 | 93.4% | 72.8% |
| 5012791 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 44.0 | 3.78e-01 | 95.6% | 91.3% |
| 3623273 | 101.1.2.712 ↗ | alpha arrays › HTH › HTH › winged helix domain › FNIP_C | 0.51 | 43.0 | 3.11e-01 | 94.5% | 54.2% |
| 3908573 | 356.1.1.3 ↗ | few secondary structure elements › PMP inhibitors › PMP inhibitors › PMP inhibitors › VWC2L_2nd | 0.51 | 30.0 | 3.72e-01 | 71.4% | 96.4% |
| 4088743 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.51 | 33.0 | 3.84e-01 | 92.3% | 100.0% |
| 3785158 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.51 | 44.0 | 3.04e-01 | 100.0% | 77.7% |
| 3894523 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.50 | 42.0 | 3.40e-01 | 97.8% | 76.9% |
| 3723542 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.50 | 44.0 | 4.04e-01 | 100.0% | 95.1% |
D2
medium
residues 145-227
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qygB01 | 1.10.472.20 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit | 0.50 | 34.0 | 3.07e-01 | 100.0% | 50.0% |