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LR025195.1__VAY27905.1__SLURMMXVI_120001__00001

Bact-Vir

LR025195.1__VAY27905.1__SLURMMXVI_120001__00001

Identity

Accession:
LR025195 ↗
Kingdom:
phage

Quality

65.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-92
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fq3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 73.0 6.27e-01 100.0% 90.6%
1ku2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 66.0 6.54e-01 88.9% 93.0%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 63.0 5.98e-01 90.7% 75.4%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 57.0 5.64e-01 77.8% 73.7%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.77 65.0 4.68e-01 90.7% 85.9%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.76 64.0 5.66e-01 92.6% 74.0%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 64.0 5.90e-01 96.3% 98.6%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.75 62.0 5.70e-01 90.7% 71.0%
3a1yA00 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.74 57.0 5.60e-01 85.2% 84.5%
1cf7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 58.0 5.49e-01 90.7% 76.1%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 61.0 5.10e-01 94.4% 69.5%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 58.0 5.07e-01 94.4% 57.5%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 52.0 4.96e-01 75.9% 90.3%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 5.33e-01 92.6% 69.9%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.72 59.0 5.50e-01 92.6% 97.1%
4y66F01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 5.36e-01 90.7% 75.8%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 5.54e-01 90.7% 78.1%
3mw6B00 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.69 57.0 4.80e-01 92.6% 56.4%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 5.17e-01 100.0% 94.1%
1jhfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 5.50e-01 100.0% 97.1%
2r5uC00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.69 60.0 4.51e-01 100.0% 63.0%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 4.15e-01 100.0% 38.0%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.68 58.0 4.87e-01 100.0% 66.0%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.67 46.0 4.12e-01 72.2% 82.9%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.65 54.0 4.97e-01 100.0% 73.7%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.92e-01 92.6% 75.8%
1t3qA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.63 52.0 4.73e-01 100.0% 84.0%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.63 47.0 4.04e-01 83.3% 56.0%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.63 43.0 3.68e-01 70.4% 52.9%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 51.0 4.18e-01 100.0% 47.8%
4nqfA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.61 45.0 3.33e-01 79.6% 60.7%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 49.0 3.99e-01 100.0% 48.2%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.59 45.0 3.98e-01 92.6% 53.9%
2gloA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 41.0 4.06e-01 88.9% 78.0%
2bkkC02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.55 47.0 3.31e-01 98.1% 72.3%
4gf0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 48.0 3.80e-01 100.0% 71.7%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 46.0 4.21e-01 100.0% 82.7%
6z4xA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 44.0 3.34e-01 100.0% 35.5%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.53 42.0 3.62e-01 92.6% 54.3%
1mhyG01 1.20.1280.10 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 0.52 40.0 3.86e-01 92.6% 85.3%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 37.0 3.24e-01 77.8% 63.9%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5023135 101.1.2.97 alpha arrays › HTH › HTH › winged helix domain › RPA_C 0.82 69.0 6.20e-01 92.6% 72.0%
5067843 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.82 66.0 6.80e-01 87.0% 100.0%
3947884 101.1.1.393 alpha arrays › HTH › HTH › Three-helical HTH › KfrA_N 0.81 61.0 6.14e-01 81.5% 80.0%
3664503 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.81 61.0 5.63e-01 83.3% 62.9%
3909408 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.81 65.0 5.89e-01 90.7% 66.7%
3299379 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.78 57.0 4.07e-01 77.8% 30.0%
4945073 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.78 64.0 5.41e-01 92.6% 66.7%
5063967 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 62.0 6.09e-01 92.6% 85.0%
3280166 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.77 60.0 5.83e-01 85.2% 75.0%
4945701 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 69.0 5.93e-01 100.0% 88.2%
4239540 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 64.0 5.05e-01 92.6% 56.4%
3662896 101.1.1.411 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r2 0.77 56.0 4.24e-01 77.8% 35.2%
3270814 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.77 62.0 5.52e-01 92.6% 62.5%
4253265 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.76 60.0 4.23e-01 88.9% 27.9%
3980765 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 60.0 4.23e-01 88.9% 27.9%
4086835 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.76 60.0 5.25e-01 88.9% 57.5%
4928803 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.76 60.0 5.26e-01 88.9% 56.5%
4555675 101.1.1.27 alpha arrays › HTH › HTH › Three-helical HTH › DsrC 0.76 66.0 5.28e-01 100.0% 69.7%
4963511 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.76 61.0 4.27e-01 90.7% 33.3%
4464531 7000.1.1.1 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605 0.76 62.0 5.36e-01 92.6% 77.6%
4962879 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.75 61.0 4.38e-01 92.6% 36.8%
4339388 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.75 60.0 5.73e-01 90.7% 95.4%
4058877 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.75 64.0 5.96e-01 98.1% 98.6%
4940618 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.75 59.0 5.31e-01 90.7% 70.0%
5012514 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 62.0 5.45e-01 96.3% 63.9%
4501841 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.74 65.0 5.75e-01 100.0% 70.0%
4657866 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.74 66.0 5.76e-01 100.0% 83.7%
4946450 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.73 59.0 5.13e-01 92.6% 68.2%
5026427 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.73 60.0 5.02e-01 92.6% 69.5%
4259069 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 64.0 4.34e-01 100.0% 33.5%
2807554 101.1.1.27 alpha arrays › HTH › HTH › Three-helical HTH › DsrC 0.72 62.0 5.10e-01 100.0% 73.8%
4945101 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.72 58.0 4.10e-01 92.6% 33.3%
None 0.72 62.0 3.71e-01 92.6% 30.3%
5051051 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.72 58.0 4.18e-01 92.6% 46.5%
3169446 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.72 62.0 5.78e-01 100.0% 98.6%
4369472 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.72 61.0 5.03e-01 100.0% 65.7%
4258132 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.72 59.0 5.03e-01 96.3% 71.6%
4269306 101.1.1.287 alpha arrays › HTH › HTH › Three-helical HTH › PF28388 0.72 54.0 5.56e-01 90.7% 90.0%
4059092 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.71 62.0 5.49e-01 100.0% 85.0%
4230066 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.71 62.0 5.26e-01 100.0% 74.4%
5062039 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.71 54.0 5.51e-01 87.0% 92.0%
3247158 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 5.18e-01 92.6% 66.7%
4944537 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 61.0 5.64e-01 100.0% 80.0%
3973673 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 61.0 5.43e-01 100.0% 85.0%
4280723 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.70 61.0 5.13e-01 100.0% 70.5%
4413143 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.70 58.0 5.11e-01 96.3% 75.3%
4135235 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.70 59.0 4.90e-01 98.1% 65.0%
4982611 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 55.0 4.23e-01 94.4% 36.7%
3929142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 52.0 5.12e-01 96.3% 78.3%
4168631 101.1.6.20 alpha arrays › HTH › HTH › TrpR › PF28388 0.68 52.0 5.42e-01 90.7% 92.0%
4210926 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.68 55.0 4.89e-01 96.3% 76.5%
3519328 148.1.3.18 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.68 46.0 3.85e-01 72.2% 66.3%
4380725 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 54.0 4.97e-01 96.3% 72.0%
3278769 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 4.77e-01 100.0% 84.4%
3500366 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.65 55.0 3.89e-01 100.0% 34.6%
4030134 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.64 54.0 4.17e-01 100.0% 40.0%
3216493 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.64 54.0 3.62e-01 100.0% 27.8%
3798156 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.64 54.0 3.73e-01 100.0% 32.0%
3288804 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 51.0 4.43e-01 96.3% 88.4%
3451532 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 49.0 4.82e-01 88.9% 85.0%
3898556 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 50.0 5.17e-01 92.6% 98.0%
4529419 101.1.1.11 alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.63 52.0 4.80e-01 100.0% 88.0%
3881053 101.1.1.220 alpha arrays › HTH › HTH › Three-helical HTH › SNAPC2 0.62 51.0 5.10e-01 96.3% 92.7%
5012142 101.1.2.205 alpha arrays › HTH › HTH › winged helix domain › PF0610-like_N 0.62 47.0 4.64e-01 92.6% 78.3%
4322551 604.23.1.0 alpha bundles › Spectrin repeat-like › Sbi complement-binding domain › Sbi complement-binding domain 0.62 47.0 4.68e-01 83.3% 81.8%
3994526 7579.1.1.1 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase 0.62 51.0 2.94e-01 94.4% 30.4%
3787785 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 44.0 4.66e-01 87.0% 95.6%
3965373 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.61 52.0 4.78e-01 96.3% 75.7%
4167208 604.15.1.0 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.61 46.0 4.50e-01 83.3% 75.0%
4939550 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.60 42.0 3.46e-01 72.2% 66.3%
5044635 2.21.1.3 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.60 45.0 3.38e-01 90.7% 34.9%
3215866 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 47.0 4.76e-01 96.3% 92.7%
3963405 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 51.0 5.08e-01 98.1% 96.4%
3246956 102.5.1.2 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › DUF4332 0.59 49.0 4.53e-01 100.0% 74.7%
5026703 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.58 46.0 2.92e-01 100.0% 18.1%
4958393 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.56 48.0 2.93e-01 100.0% 16.8%
3289838 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 4.18e-01 96.3% 77.1%
3278114 10.12.1.75 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding_2 0.53 41.0 2.73e-01 83.3% 40.9%
1346823 109.4.1.210 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.52 42.0 4.04e-01 92.6% 76.6%