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LR025195.1__VAY27907.1__SLURMMXVI_120002__00002

Bact-Vir

LR025195.1__VAY27907.1__SLURMMXVI_120002__00002

Identity

Accession:
LR025195 ↗
Kingdom:
phage

Quality

73.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Seuratvirus› Escherichia_phage_vB_Eco_SLUR76

TaxID: 2029172

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-108
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.76 62.0 6.03e-01 94.9% 80.2%
1vw4Z00 4.10.410.60 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.56 33.0 4.05e-01 90.8% 93.5%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.55 49.0 4.20e-01 100.0% 69.1%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 25.0 2.88e-01 71.4% 54.3%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.54 27.0 3.37e-01 92.9% 84.3%
1ozjB00 3.90.520.10 Alpha Beta › Alpha-Beta Complex › Smad3; Chain A › SMAD MH1 domain 0.52 45.0 4.24e-01 98.0% 86.3%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3586841 378.1.1.7 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.69 61.0 5.77e-01 95.9% 85.2%
3539740 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.67 53.0 4.83e-01 86.7% 64.8%