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LR025195.1__VAY28057.1__SLURMMXVI_120090__00090

Bact-Vir

LR025195.1__VAY28057.1__SLURMMXVI_120090__00090

Identity

Accession:
LR025195 ↗
Kingdom:
phage

Quality

78.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-38
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yxlA03 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.79 62.0 5.40e-01 86.8% 60.3%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.77 61.0 5.11e-01 97.4% 50.0%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.73 54.0 4.10e-01 81.6% 34.1%
2x3lA01 3.90.1150.150 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.71 61.0 4.47e-01 100.0% 44.8%
2dulA02 3.30.56.70 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › N2,N2-dimethylguanosine tRNA methyltransferase, C-terminal domain 0.71 56.0 4.97e-01 92.1% 61.0%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.70 56.0 4.24e-01 92.1% 39.6%
2o0bA01 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.67 53.0 3.36e-01 92.1% 28.2%
1b7yB01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.66 51.0 4.40e-01 97.4% 51.4%
4pavB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.65 49.0 3.51e-01 89.5% 26.7%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.64 48.0 4.33e-01 86.8% 56.9%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.63 49.0 4.48e-01 94.7% 63.2%
2j0nB00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.63 46.0 3.01e-01 81.6% 60.4%
6d0aA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 45.0 3.41e-01 86.8% 29.6%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.62 44.0 2.63e-01 81.6% 12.3%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 46.0 3.46e-01 100.0% 87.7%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 3.37e-01 76.3% 41.6%
4jz6A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.61 41.0 2.55e-01 71.1% 85.4%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.60 45.0 3.63e-01 100.0% 41.6%
1yavB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 45.0 3.15e-01 84.2% 64.4%
4nn2B00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 46.0 3.40e-01 94.7% 95.8%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.59 42.0 2.80e-01 81.6% 48.4%
3mcpA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 44.0 2.74e-01 84.2% 76.8%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 46.0 3.88e-01 89.5% 56.5%
4s1hA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 49.0 2.94e-01 97.4% 32.4%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 42.0 2.56e-01 78.9% 21.1%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 47.0 2.68e-01 92.1% 83.2%
3k1lA02 3.30.457.30 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.58 44.0 3.65e-01 100.0% 42.2%
2cxaA01 3.30.70.3550 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Leucyl/phenylalanyl-tRNA-protein transferase, N-terminal domain 0.57 42.0 3.87e-01 89.5% 90.0%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.01e-01 76.3% 32.5%
7x0fA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.57 47.0 3.26e-01 92.1% 70.3%
2jhjA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.57 42.0 3.06e-01 81.6% 29.2%
3d9xA01 6.20.50.100 Special › Other non-globular › N-terminal domain of TfIIb › 0.57 43.0 4.12e-01 94.7% 88.0%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.55 43.0 2.93e-01 86.8% 40.4%
2grvC03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.55 45.0 2.89e-01 100.0% 40.2%
4g1uD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 40.0 2.61e-01 100.0% 37.7%
6fjxA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 43.0 2.65e-01 92.1% 91.1%
6n59A02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 39.0 3.24e-01 84.2% 53.6%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 40.0 3.04e-01 100.0% 32.3%
3alfA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 40.0 3.53e-01 92.1% 60.0%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.53 38.0 2.56e-01 86.8% 29.9%
2gmhA03 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 3.09e-01 92.1% 66.7%
3qwuA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.44e-01 73.7% 80.9%
1wg4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 38.0 3.28e-01 92.1% 51.9%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.35e-01 84.2% 85.7%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 40.0 3.44e-01 89.5% 50.0%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 2.83e-01 97.4% 32.1%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 42.0 2.69e-01 100.0% 68.4%
1edzA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 41.0 2.80e-01 92.1% 64.7%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 2.92e-01 97.4% 30.2%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3198146 109.4.1.526 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc 0.77 45.0 2.53e-01 97.4% 5.7%
5051708 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 61.0 5.66e-01 97.4% 98.0%
3111925 3114.1.1.2 beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP_2 0.71 54.0 4.34e-01 86.8% 70.0%
3722558 331.23.1.4 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.70 56.0 4.55e-01 94.7% 82.5%
5061359 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.70 58.0 3.42e-01 100.0% 11.5%
5073703 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.69 50.0 4.73e-01 84.2% 66.0%
5082770 225.2.1.1 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.68 56.0 3.69e-01 100.0% 81.7%
4496868 304.7.1.4 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › S8_pro-domain 0.67 50.0 4.09e-01 92.1% 42.4%
5037026 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.66 49.0 3.39e-01 78.9% 62.5%
5073781 219.1.1.153 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.66 49.0 3.15e-01 81.6% 51.3%
5060014 7527.1.1.2 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.66 47.0 2.69e-01 71.1% 8.2%
3574374 304.7.1.4 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › S8_pro-domain 0.65 50.0 4.04e-01 92.1% 43.5%
4967749 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.65 47.0 3.23e-01 78.9% 35.0%
4987428 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.65 49.0 3.17e-01 81.6% 50.3%
3602195 1057.1.1.1 a+b two layers › Endonuclease PI-TkoII domain IV › Endonuclease PI-TkoII domain IV › Endonuclease PI-TkoII domain IV › PI-TkoII_IV 0.65 46.0 3.23e-01 81.6% 22.1%
5045943 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.64 49.0 3.20e-01 81.6% 45.8%
4968561 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.64 47.0 2.99e-01 78.9% 43.8%
3387583 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.64 47.0 3.09e-01 78.9% 48.1%
5079449 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.64 48.0 3.08e-01 81.6% 48.8%
4973244 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.63 48.0 3.12e-01 81.6% 48.5%
4568416 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 49.0 3.85e-01 89.5% 53.3%
5014569 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.63 46.0 2.89e-01 78.9% 36.0%
4932485 3261.1.1.0 a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb 0.63 43.0 3.97e-01 76.3% 56.4%
4117819 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 48.0 4.12e-01 97.4% 57.3%
3390038 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.62 47.0 2.90e-01 89.5% 14.9%
4956064 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 46.0 3.01e-01 81.6% 50.6%
4192821 7574.1.1.4 a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › POR_N 0.61 50.0 3.05e-01 100.0% 71.9%
4444437 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.61 40.0 4.08e-01 71.1% 68.6%
3204071 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 47.0 2.77e-01 100.0% 44.6%
4545564 387.1.5.6 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Toxin_6 0.59 43.0 4.69e-01 78.9% 100.0%
4992572 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.58 43.0 3.18e-01 97.4% 87.1%
3637475 101.1.1.247 alpha arrays › HTH › HTH › Three-helical HTH › zf-H2C2 0.58 41.0 3.00e-01 76.3% 26.1%
3395806 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 41.0 2.49e-01 78.9% 55.4%
4272342 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.57 39.0 4.02e-01 78.9% 80.0%
3958923 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 46.0 2.89e-01 89.5% 71.0%
4931446 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.57 41.0 2.87e-01 78.9% 89.6%
3800445 304.9.1.81 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A 0.56 42.0 2.76e-01 94.7% 35.5%
5033515 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.56 46.0 3.01e-01 100.0% 57.4%
4226159 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.55 43.0 3.52e-01 86.8% 60.0%
3592184 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 2.95e-01 100.0% 20.6%
3800966 109.20.1.0 alpha superhelices › Repetitive alpha hairpins › Coatomer subunit alpha C-terminal domain › Coatomer subunit alpha C-terminal domain 0.54 41.0 2.58e-01 86.8% 55.2%
3599878 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.50e-01 97.4% 56.2%
3629836 109.20.1.3 alpha superhelices › Repetitive alpha hairpins › Coatomer subunit alpha C-terminal domain › Coatomer subunit alpha C-terminal domain › COPI_C, TPR_COPA_B 0.53 45.0 2.54e-01 100.0% 42.2%
3715717 221.1.2.0 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.53 38.0 3.28e-01 84.2% 87.1%
5081177 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 40.0 3.91e-01 92.1% 95.6%
5061675 101.1.2.214 alpha arrays › HTH › HTH › winged helix domain › DnaD_N 0.52 39.0 3.53e-01 92.1% 66.7%
4261505 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.52 39.0 3.47e-01 92.1% 60.0%
4939108 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.54e-01 100.0% 60.0%
3236117 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.51 41.0 2.66e-01 92.1% 29.7%
None 0.51 38.0 2.37e-01 100.0% 48.9%
3251582 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.50 39.0 3.00e-01 100.0% 53.6%
4096474 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.50 40.0 3.68e-01 86.8% 96.0%
3847647 109.4.1.544 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ParcG 0.50 35.0 2.39e-01 71.1% 71.6%