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LR025196.1__VAY27836.1__SLURMMXVI_10045__00045

Bact-Vir

LR025196.1__VAY27836.1__SLURMMXVI_10045__00045

Identity

Accession:
LR025196 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Seuratvirus› Escherichia_phage_vB_Eco_SLUR63

TaxID: 2029170

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-145
PDB
Domain cluster: rep: GP72__YP_007417837__Caviid_betaherpesvirus_2__33706__D239-337
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00692.25 best dUTPase 53.1 4.00e-14 97.4% 76.7%
D2 medium residues 180-230
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xa6A02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.55 43.0 4.00e-01 92.2% 82.6%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.51 33.0 2.91e-01 82.4% 38.6%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3479750 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.60 50.0 4.75e-01 92.2% 95.0%
4125041 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.60 36.0 4.13e-01 78.4% 88.6%
3230993 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.54 43.0 4.27e-01 92.2% 94.5%
3913959 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.51 40.0 2.98e-01 96.1% 78.8%
3355992 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 34.0 3.57e-01 80.4% 73.3%