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LR215721.1__VEV89117.1__X__00001

Bact-Vir

LR215721.1__VEV89117.1__X__00001

Identity

Accession:
LR215721 ↗
Kingdom:
phage

Quality

59.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_Stab22

TaxID: 2490450

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 193-243
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 66.0 5.58e-01 100.0% 56.2%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 71.0 6.59e-01 100.0% 92.2%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 70.0 6.18e-01 100.0% 81.1%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 70.0 6.45e-01 100.0% 89.4%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 66.0 5.81e-01 100.0% 64.4%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 66.0 6.00e-01 100.0% 91.0%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 63.0 5.73e-01 100.0% 91.2%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.70 60.0 4.01e-01 100.0% 28.6%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 61.0 5.45e-01 100.0% 83.3%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.48e-01 100.0% 85.5%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 54.0 4.50e-01 94.1% 65.6%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 4.75e-01 100.0% 76.3%
4nyqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 50.0 3.61e-01 88.2% 29.4%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.63 56.0 4.48e-01 100.0% 54.0%
7zhhA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 45.0 4.15e-01 76.5% 100.0%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 51.0 3.75e-01 94.1% 76.8%
3lh4A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 48.0 3.83e-01 92.2% 80.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.35e-01 100.0% 67.5%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.58 40.0 3.31e-01 86.3% 37.6%
1n02A00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.57 44.0 3.70e-01 92.2% 74.5%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 46.0 3.47e-01 92.2% 79.3%
1cboA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 44.0 2.77e-01 92.2% 65.4%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.56 46.0 2.81e-01 96.1% 20.2%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 41.0 4.01e-01 90.2% 75.4%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.54 41.0 3.42e-01 92.2% 75.0%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 40.0 3.90e-01 86.3% 77.6%
4i93A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 3.37e-01 84.3% 87.4%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 43.0 2.66e-01 94.1% 45.9%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.70e-01 100.0% 69.9%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 39.0 2.44e-01 86.3% 31.6%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 40.0 2.61e-01 96.1% 27.1%
1y8tA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 39.0 3.46e-01 88.2% 80.7%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.52 40.0 2.99e-01 96.1% 48.9%
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.52 39.0 3.66e-01 90.2% 90.0%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.60e-01 94.1% 37.8%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 39.0 3.67e-01 90.2% 70.1%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 40.0 2.71e-01 94.1% 21.7%
2qv8A00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.51 40.0 2.94e-01 86.3% 50.0%
1c3kA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.51 37.0 2.84e-01 84.3% 86.0%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.31e-01 94.1% 47.7%
3eweA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 39.0 2.63e-01 94.1% 44.3%
1o97C00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 40.0 2.72e-01 100.0% 55.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3631298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 72.0 6.27e-01 100.0% 78.7%
3210707 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.80 71.0 6.76e-01 100.0% 98.3%
531 4.1.1.281 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_KALRN 0.79 70.0 6.18e-01 100.0% 81.1%
3257276 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 70.0 5.22e-01 100.0% 48.0%
157526 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 70.0 6.56e-01 100.0% 93.7%
3171604 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 70.0 6.13e-01 100.0% 86.7%
3879132 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 70.0 6.12e-01 100.0% 81.3%
3623785 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 69.0 6.08e-01 100.0% 78.7%
3561094 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 70.0 6.10e-01 100.0% 81.3%
3787441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 69.0 5.68e-01 100.0% 65.6%
3600929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 70.0 5.82e-01 100.0% 72.9%
3936225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 67.0 6.09e-01 100.0% 81.4%
3710893 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 69.0 5.04e-01 100.0% 52.3%
3999507 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 68.0 6.07e-01 100.0% 87.1%
3227565 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 65.0 6.15e-01 96.1% 95.0%
3955235 4.1.1.183 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4926 0.75 69.0 5.83e-01 100.0% 68.8%
3938415 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 67.0 6.15e-01 100.0% 93.8%
3607307 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 66.0 5.98e-01 100.0% 87.1%
3881192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 67.0 4.58e-01 100.0% 31.8%
3710561 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 67.0 6.17e-01 100.0% 93.8%
4995669 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 66.0 5.80e-01 100.0% 93.3%
3290564 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.73 66.0 5.41e-01 100.0% 72.2%
3598283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 66.0 4.84e-01 100.0% 39.2%
4888987 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.73 62.0 5.66e-01 100.0% 71.0%
3255902 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.22e-01 100.0% 60.0%
3924760 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 65.0 5.29e-01 100.0% 63.3%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 64.0 5.91e-01 100.0% 81.5%
4943011 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.70 64.0 5.12e-01 100.0% 56.8%
3268482 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.69 61.0 5.03e-01 100.0% 73.3%
3232165 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 59.0 4.96e-01 100.0% 98.9%
2141406 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.66 57.0 4.24e-01 100.0% 42.2%
3585016 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 46.0 4.40e-01 82.4% 95.0%
2476874 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 49.0 4.16e-01 96.1% 57.6%
3471722 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 50.0 3.90e-01 94.1% 52.2%
3882163 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 2.62e-01 76.5% 22.0%
4025728 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.56 43.0 3.42e-01 86.3% 89.6%
4018136 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 42.0 2.43e-01 82.4% 45.2%
3980916 1.1.10.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) 0.56 38.0 3.48e-01 70.6% 80.0%
5037626 5.1.10.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › FG-GAP_3 0.56 39.0 3.43e-01 78.4% 90.6%
4018977 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 3.59e-01 100.0% 61.6%
3513627 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.54 42.0 2.67e-01 92.2% 35.4%
4929308 4295.1.1.0 ↗ beta barrels › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.54 41.0 3.03e-01 96.1% 86.9%
3206453 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 41.0 2.42e-01 88.2% 14.0%
3444104 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 41.0 2.65e-01 94.1% 30.0%
3705541 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 3.75e-01 100.0% 76.0%
4660425 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.53 38.0 3.00e-01 76.5% 39.1%
3391005 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 42.0 2.62e-01 94.1% 22.1%
3827487 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 40.0 2.54e-01 94.1% 31.8%
3785954 5.1.3.154 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.52 41.0 2.53e-01 94.1% 22.2%
4961699 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 41.0 2.95e-01 94.1% 92.4%
None — 0.52 43.0 2.64e-01 96.1% 18.3%
4068266 5.1.4.370 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WDR55 0.52 40.0 2.58e-01 94.1% 34.4%
4881988 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.52 38.0 3.45e-01 84.3% 84.6%
3504193 220.1.1.49 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.52 42.0 3.27e-01 96.1% 43.8%
3609520 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 44.0 3.66e-01 100.0% 85.3%
4418514 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 39.0 2.38e-01 96.1% 56.0%
D2 high residues 254-311
PDB
Domain cluster: rep: OL741057.1__UJQ43235.1__X__00023__D151-224
D3 medium residues 113-188
PDB