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LR215721.1__VEV89518.1__X__00199

Bact-Vir

LR215721.1__VEV89518.1__X__00199

Identity

Accession:
LR215721 ↗
Kingdom:
phage

Quality

72.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_Stab22

TaxID: 2490450

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-52
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 69.0 6.66e-01 100.0% 91.2%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.78 68.0 5.89e-01 100.0% 63.6%
7k18A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.72 64.0 4.68e-01 100.0% 38.8%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.69 58.0 5.89e-01 94.0% 98.0%
2b3tB01 6.10.140.1980 Special › Helix non-globular › Helix Hairpins › 0.66 52.0 4.81e-01 88.0% 92.3%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.65 52.0 3.79e-01 90.0% 87.3%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 43.0 4.37e-01 76.0% 75.0%
1eg3A02 6.10.140.70 Special › Helix non-globular › Helix Hairpins › 0.60 40.0 4.02e-01 74.0% 71.4%
2yfqB01 1.10.8.1210 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 44.0 4.36e-01 82.0% 84.6%
1fp1D02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 45.0 2.96e-01 90.0% 27.2%
2vdwG00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 44.0 2.73e-01 86.0% 35.1%
2grvA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.56 38.0 2.93e-01 70.0% 57.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3480452 7515.1.1.0 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like 0.92 83.0 4.81e-01 98.0% 13.1%
3872946 601.19.1.55 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28139 0.82 71.0 4.15e-01 100.0% 12.5%
3626992 632.8.1.2 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C 0.81 72.0 5.62e-01 100.0% 47.6%
4945035 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.80 69.0 6.59e-01 100.0% 86.7%
5072726 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.79 66.0 5.88e-01 98.0% 65.3%
3839497 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.78 68.0 5.76e-01 100.0% 91.8%
3994015 604.32.1.0 ↗ alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY 0.76 66.0 5.07e-01 100.0% 41.7%
3285244 5063.1.1.19 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › DUF2277 0.61 46.0 4.82e-01 82.0% 100.0%