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LR535917.1__VFR14894.1__SPFM20_00216__00216
Bact-VirLR535917.1__VFR14894.1__SPFM20_00216__00216
Identity
- Accession:
- LR535917 ↗
- Kingdom:
- phage
Quality
65.6
mean pLDDT
Taxonomy
TaxID: 2528689
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-63
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4q66D01 | 6.20.120.50 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.75 | 39.0 | 3.45e-01 | 75.5% | 37.0% |
| 1ml8A01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.66 | 34.0 | 4.06e-01 | 81.1% | 76.5% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.66 | 47.0 | 4.35e-01 | 79.2% | 77.8% |
| 4aq1A02 | 2.60.40.1080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 43.0 | 3.65e-01 | 77.4% | 62.6% |
| 5d1oA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.60 | 42.0 | 3.88e-01 | 77.4% | 79.5% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.59 | 43.0 | 4.24e-01 | 83.0% | 82.0% |
| 7razA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 37.0 | 3.13e-01 | 88.7% | 40.0% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 37.0 | 3.79e-01 | 88.7% | 68.0% |
| 3sqfA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.57 | 41.0 | 3.44e-01 | 77.4% | 74.7% |
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.57 | 41.0 | 3.54e-01 | 77.4% | 51.2% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 39.0 | 4.10e-01 | 90.6% | 83.0% |
| 6jy5B00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.55 | 37.0 | 3.17e-01 | 73.6% | 45.1% |
| 1y8tA03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.54 | 44.0 | 3.77e-01 | 90.6% | 81.8% |
| 2zkmX01 | 2.30.29.240 | Mainly Beta › Roll › PH-domain like › | 0.53 | 36.0 | 2.56e-01 | 75.5% | 27.7% |
| 4jxuA02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.52 | 38.0 | 2.92e-01 | 84.9% | 57.1% |
| 2kkcA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 40.0 | 3.31e-01 | 86.8% | 89.0% |
| 3bc9A01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 37.0 | 3.21e-01 | 79.2% | 66.7% |
| 1y13A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.51 | 41.0 | 3.07e-01 | 96.2% | 94.5% |
| 1d8cA03 | 1.20.1220.12 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III | 0.51 | 33.0 | 2.55e-01 | 79.2% | 26.7% |
| 5nahA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 39.0 | 2.31e-01 | 83.0% | 32.8% |
| 3sokB00 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.50 | 42.0 | 3.18e-01 | 100.0% | 58.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4396206 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.65 | 44.0 | 4.32e-01 | 73.6% | 85.0% |
| 3252442 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.62 | 52.0 | 4.03e-01 | 100.0% | 55.4% |
| 3401480 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.62 | 45.0 | 4.17e-01 | 79.2% | 61.4% |
| 5042477 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 39.0 | 4.17e-01 | 88.7% | 75.6% |
| 4152624 | 375.1.1.17 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1f | 0.61 | 35.0 | 3.92e-01 | 75.5% | 75.0% |
| 3622636 | 642.1.1.2 ↗ | a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › SARA_C | 0.59 | 51.0 | 3.37e-01 | 100.0% | 22.3% |
| 3971883 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.59 | 34.0 | 2.08e-01 | 96.2% | 7.6% |
| 3687406 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 37.0 | 3.11e-01 | 77.4% | 41.7% |
| 4977240 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.56 | 41.0 | 3.20e-01 | 79.2% | 35.2% |
| 3243143 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 40.0 | 3.70e-01 | 88.7% | 61.5% |
| 1263713 | 4.1.1.102 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_3 | 0.54 | 31.0 | 3.16e-01 | 75.5% | 55.8% |
| 3256431 | 4.1.1.360 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 | 0.54 | 39.0 | 3.37e-01 | 88.7% | 50.0% |
| 4218142 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.53 | 38.0 | 3.08e-01 | 88.7% | 40.0% |
| 3231177 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.53 | 38.0 | 3.93e-01 | 88.7% | 80.0% |
| 4074446 | 2003.1.2.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 | 0.53 | 40.0 | 3.01e-01 | 83.0% | 45.4% |
| 3264325 | 101.1.2.106 ↗ | alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 | 0.53 | 42.0 | 2.90e-01 | 86.8% | 59.4% |
| 4204534 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.53 | 40.0 | 3.01e-01 | 83.0% | 45.4% |
| 3373330 | 4.1.1.337 ↗ | beta barrels › SH3 › SH3 › SH3 › CSD_RNase_II | 0.52 | 38.0 | 3.36e-01 | 88.7% | 53.3% |
| 3404936 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.52 | 40.0 | 4.10e-01 | 84.9% | 86.0% |
| 3855972 | 4.1.1.253 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4537 | 0.52 | 31.0 | 2.93e-01 | 75.5% | 46.2% |
| 3993250 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.52 | 31.0 | 3.10e-01 | 75.5% | 56.4% |
| 3304602 | 4.1.1.427 ↗ | beta barrels › SH3 › SH3 › SH3 › F-box | 0.52 | 37.0 | 3.10e-01 | 77.4% | 77.9% |
| 3784367 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.50 | 37.0 | 3.17e-01 | 83.0% | 52.6% |
| 4139090 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.50 | 35.0 | 3.52e-01 | 88.7% | 70.9% |
| 3621818 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.50 | 29.0 | 3.05e-01 | 81.1% | 54.0% |