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LR595850.1__VUA85693.1__X__00066

Bact-Vir

LR595850.1__VUA85693.1__X__00066

Identity

Accession:
LR595850 ↗
Kingdom:
phage

Quality

95.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jouyvirus› Escherichia_phage_1H12

TaxID: 2847055

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-152
PDB
Domain cluster: rep: MZ171369__QXM18623.1__X__00006__D5-135
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04463.18 best 2-thiour_desulf 144.2 3.90e-42 97.3% 100.0%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2h3hB02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 44.0 4.35e-01 100.0% 73.9%
3ksmA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 45.0 4.54e-01 100.0% 82.0%
2bisA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 52.0 4.39e-01 100.0% 87.0%
5awhA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 47.0 4.42e-01 100.0% 76.5%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 37.0 4.26e-01 98.6% 99.0%
3d03A01 3.60.21.40 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › GpdQ, catalytic alpha/beta sandwich domain 0.53 36.0 3.85e-01 100.0% 79.4%
2v6fA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 47.0 3.59e-01 100.0% 63.9%
1y1pA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 46.0 3.63e-01 100.0% 93.6%
3h75A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 38.0 3.55e-01 100.0% 60.8%
3vc7A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 46.0 3.97e-01 100.0% 87.3%
5thqA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 46.0 3.87e-01 100.0% 87.9%
4obvA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.50 39.0 3.31e-01 100.0% 50.0%
5t5qB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 45.0 3.90e-01 100.0% 85.1%
6ki3A01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.50 40.0 3.25e-01 85.7% 81.4%
3e9qA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 45.0 3.78e-01 100.0% 84.3%
2btoA01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.50 45.0 3.75e-01 100.0% 89.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979795 2007.1.5.19 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › 2-thiour_desulf 0.99 98.0 7.76e-01 100.0% 57.9%
4951908 2007.1.14.32 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › 2-thiour_desulf 0.97 84.0 6.91e-01 100.0% 55.3%
5016114 2007.1.14.32 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › 2-thiour_desulf 0.97 93.0 8.72e-01 100.0% 84.7%
5035046 2007.1.5.19 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › 2-thiour_desulf 0.96 92.0 9.19e-01 100.0% 96.7%
5003086 2007.1.3.70 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › 2-thiour_desulf 0.95 91.0 8.60e-01 100.0% 85.3%
5003018 2007.1.4.12 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › 2-thiour_desulf 0.95 92.0 8.61e-01 100.0% 85.3%
None — 0.95 90.0 7.40e-01 100.0% 60.9%
5021111 2007.1.5.19 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › 2-thiour_desulf 0.95 91.0 7.42e-01 100.0% 59.6%
5045757 2007.1.5.19 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › 2-thiour_desulf 0.93 90.0 8.48e-01 100.0% 85.9%
5014281 2007.1.3.38 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › 2-thiour_desulf_put 0.77 73.0 6.60e-01 100.0% 94.2%
5055404 2007.1.14.36 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › PF27735 0.77 73.0 6.81e-01 100.0% 90.9%
5035686 2007.1.3.38 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › 2-thiour_desulf_put 0.75 71.0 6.66e-01 100.0% 91.9%
5053813 2007.1.14.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.74 70.0 6.06e-01 100.0% 95.3%
5031364 2007.1.14.36 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › PF27735 0.71 65.0 6.41e-01 100.0% 91.6%
3602793 7512.1.1.24 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.55 50.0 4.31e-01 100.0% 89.6%
3720049 2484.1.1.191 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RHSP 0.52 33.0 3.71e-01 89.8% 83.6%
3911068 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 38.0 3.46e-01 100.0% 54.3%
3724092 2003.1.1.148 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short, KR 0.51 45.0 3.64e-01 100.0% 83.9%
3959088 2003.1.1.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_4 0.50 38.0 2.95e-01 78.2% 77.8%
D2 medium residues 160-312
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08349.17 best DUF1722 140.7 3.40e-41 77.1% 100.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3am6A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 38.0 3.37e-01 74.5% 75.9%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.52 30.0 3.27e-01 71.9% 66.2%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.51 32.0 3.62e-01 100.0% 81.9%
2c0gA02 1.20.1150.12 Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain 0.50 30.0 3.43e-01 100.0% 81.1%
1pmiA02 1.10.441.10 Mainly Alpha › Orthogonal Bundle › Phosphomannose Isomerase; domain 2 › Phosphomannose Isomerase, domain 2 0.50 37.0 3.87e-01 85.0% 85.3%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5054529 102.1.3.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain 0.60 38.0 4.12e-01 79.7% 76.0%
3633937 3691.1.1.1 ↗ alpha arrays › Phosphomannose isomerase helical insertion domain › Phosphomannose isomerase helical insertion domain › Phosphomannose isomerase helical insertion domain › PMI_typeI_hel 0.57 40.0 4.42e-01 84.3% 91.7%
1872111 11.1.1.154 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S 0.52 39.0 3.64e-01 100.0% 62.1%
1030901 3691.1.1.1 ↗ alpha arrays › Phosphomannose isomerase helical insertion domain › Phosphomannose isomerase helical insertion domain › Phosphomannose isomerase helical insertion domain › PMI_typeI_hel 0.51 36.0 4.08e-01 90.2% 98.2%