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LR595859.1__VUD36457.1__X__00058
Bact-VirLR595859.1__VUD36457.1__X__00058
Identity
- Accession:
- LR595859 ↗
- Kingdom:
- phage
Quality
71.5
mean pLDDT
Taxonomy
TaxID: 2847056
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 184-235
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 60.0 | 6.18e-01 | 98.1% | 94.0% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 58.0 | 4.60e-01 | 90.4% | 43.1% |
| 4huzA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.71 | 49.0 | 3.51e-01 | 73.1% | 26.5% |
| 2rhiA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 59.0 | 4.59e-01 | 94.2% | 68.8% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 56.0 | 5.71e-01 | 96.2% | 94.0% |
| 4ytlA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 58.0 | 5.94e-01 | 94.2% | 96.0% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 56.0 | 5.39e-01 | 94.2% | 78.3% |
| 1wczA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.69 | 51.0 | 3.95e-01 | 80.8% | 67.8% |
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.68 | 51.0 | 5.41e-01 | 82.7% | 95.7% |
| 2vobB02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.68 | 60.0 | 3.96e-01 | 100.0% | 57.9% |
| 6bogA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 56.0 | 5.66e-01 | 94.2% | 94.2% |
| 3ic8A01 | 3.40.30.110 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.67 | 56.0 | 3.87e-01 | 94.2% | 30.5% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 57.0 | 4.72e-01 | 98.1% | 80.2% |
| 4f88102 | 3.90.1720.60 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.66 | 57.0 | 3.81e-01 | 100.0% | 71.4% |
| 1sz2B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.66 | 49.0 | 3.78e-01 | 80.8% | 76.7% |
| 3h8zA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 52.0 | 5.43e-01 | 88.5% | 93.8% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 55.0 | 5.42e-01 | 92.3% | 87.5% |
| 3feoB02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 57.0 | 4.89e-01 | 98.1% | 79.5% |
| 2pi2D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 52.0 | 3.99e-01 | 88.5% | 78.0% |
| 4n4iA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 58.0 | 4.82e-01 | 100.0% | 86.7% |
| 2vb6A01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.65 | 54.0 | 5.42e-01 | 98.1% | 92.6% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 56.0 | 5.26e-01 | 98.1% | 100.0% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.64 | 48.0 | 3.49e-01 | 82.7% | 68.0% |
| 3nqkA02 | 2.40.128.440 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 | 0.63 | 51.0 | 3.70e-01 | 94.2% | 89.4% |
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 51.0 | 4.54e-01 | 100.0% | 70.2% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.60 | 49.0 | 3.78e-01 | 92.3% | 83.6% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.60 | 46.0 | 3.13e-01 | 84.6% | 57.3% |
| 4rbnA01 | 3.10.450.330 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 43.0 | 3.30e-01 | 82.7% | 45.0% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.57 | 46.0 | 3.04e-01 | 96.2% | 45.5% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.57 | 42.0 | 2.95e-01 | 84.6% | 56.5% |
| 2aiqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 41.0 | 3.26e-01 | 80.8% | 72.6% |
| 4q63A00 | 2.40.10.430 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 41.0 | 3.53e-01 | 84.6% | 78.5% |
| 2aujD03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.55 | 43.0 | 4.12e-01 | 90.4% | 75.8% |
| 1wi1A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 41.0 | 3.49e-01 | 92.3% | 84.7% |
| 4owkE00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 45.0 | 3.46e-01 | 100.0% | 96.3% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 45.0 | 3.72e-01 | 100.0% | 65.7% |
| 2q18X01 | 3.10.330.40 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.54 | 43.0 | 4.07e-01 | 98.1% | 98.6% |
| 5eiqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 3.20e-01 | 73.1% | 93.4% |
| 2zaiB03 | 2.60.40.3020 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 37.0 | 3.06e-01 | 76.9% | 74.8% |
| 5dzeA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 45.0 | 3.10e-01 | 100.0% | 60.3% |
| 1mc0A01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 41.0 | 3.05e-01 | 98.1% | 81.6% |
| 3q48A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 34.0 | 3.05e-01 | 73.1% | 78.3% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981575 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.96 | 91.0 | 8.93e-01 | 100.0% | 94.5% |
| 4369736 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.80 | 62.0 | 6.57e-01 | 96.2% | 95.6% |
| 4182977 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.78 | 59.0 | 5.64e-01 | 94.2% | 70.0% |
| 5058671 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 65.0 | 6.45e-01 | 98.1% | 87.3% |
| 5033075 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 65.0 | 6.42e-01 | 98.1% | 87.3% |
| 4952887 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 66.0 | 6.56e-01 | 100.0% | 90.9% |
| 4992872 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 67.0 | 6.64e-01 | 96.2% | 90.9% |
| 3893808 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.76 | 68.0 | 4.10e-01 | 98.1% | 29.1% |
| 4031578 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 60.0 | 6.15e-01 | 98.1% | 88.0% |
| 4429179 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.76 | 58.0 | 6.15e-01 | 94.2% | 95.6% |
| 4946165 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 64.0 | 6.29e-01 | 98.1% | 89.1% |
| 4950396 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 62.0 | 6.14e-01 | 100.0% | 87.3% |
| 4972872 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.74 | 58.0 | 6.08e-01 | 92.3% | 100.0% |
| 3278801 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.74 | 60.0 | 5.61e-01 | 100.0% | 72.3% |
| 4947995 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 63.0 | 6.25e-01 | 100.0% | 90.9% |
| 3603357 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 64.0 | 6.28e-01 | 96.2% | 90.9% |
| 5005032 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.73 | 63.0 | 5.70e-01 | 96.2% | 72.9% |
| 5017214 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 64.0 | 6.32e-01 | 100.0% | 92.7% |
| 1759629 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.73 | 62.0 | 4.87e-01 | 94.2% | 47.7% |
| 3989574 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 59.0 | 5.03e-01 | 90.4% | 61.2% |
| 3402950 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.73 | 65.0 | 3.76e-01 | 100.0% | 22.4% |
| 4990212 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 63.0 | 6.20e-01 | 100.0% | 92.7% |
| 5047239 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 60.0 | 5.69e-01 | 96.2% | 82.8% |
| 3520308 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 59.0 | 4.79e-01 | 90.4% | 62.1% |
| 3996279 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.71 | 61.0 | 5.23e-01 | 94.2% | 68.8% |
| None | — | 0.70 | 61.0 | 3.58e-01 | 96.2% | 22.8% | |
| 3578208 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 60.0 | 5.90e-01 | 92.3% | 94.5% |
| 3704305 | 4.1.1.344 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31193 | 0.70 | 61.0 | 5.54e-01 | 98.1% | 82.9% |
| 5025079 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 60.0 | 5.97e-01 | 98.1% | 92.7% |
| 3300226 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.70 | 61.0 | 5.23e-01 | 96.2% | 95.0% |
| 3668420 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.70 | 60.0 | 4.05e-01 | 96.2% | 63.2% |
| 4932493 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 61.0 | 5.71e-01 | 100.0% | 84.6% |
| 4981036 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.70 | 54.0 | 5.68e-01 | 92.3% | 100.0% |
| 3415621 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.69 | 52.0 | 5.02e-01 | 82.7% | 73.3% |
| 3240407 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.69 | 59.0 | 5.33e-01 | 94.2% | 82.9% |
| 5006274 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.69 | 60.0 | 4.39e-01 | 98.1% | 39.3% |
| 3928136 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 59.0 | 5.67e-01 | 94.2% | 91.7% |
| 3425872 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.69 | 56.0 | 4.69e-01 | 90.4% | 82.2% |
| 3302391 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.69 | 60.0 | 4.37e-01 | 98.1% | 59.3% |
| 3976834 | 4.1.1.156 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2158 | 0.68 | 55.0 | 5.63e-01 | 90.4% | 92.0% |
| 3926207 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 56.0 | 5.61e-01 | 90.4% | 98.1% |
| 4403216 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.68 | 59.0 | 5.34e-01 | 96.2% | 72.9% |
| 3625264 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 59.0 | 4.89e-01 | 100.0% | 88.4% |
| 3795384 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 60.0 | 3.94e-01 | 100.0% | 39.1% |
| 3964733 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 55.0 | 5.45e-01 | 96.2% | 87.3% |
| 3279614 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.67 | 58.0 | 4.16e-01 | 98.1% | 89.0% |
| 5037849 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.67 | 57.0 | 4.38e-01 | 98.1% | 43.2% |
| 4015238 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.66 | 58.0 | 4.35e-01 | 98.1% | 72.0% |
| 3181766 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.66 | 59.0 | 5.24e-01 | 100.0% | 70.7% |
| 3268923 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 56.0 | 4.53e-01 | 98.1% | 63.8% |
| 5039793 | 219.1.1.77 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF3335 | 0.66 | 57.0 | 3.85e-01 | 100.0% | 34.6% |
| 3358753 | 4.1.1.381 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 | 0.65 | 57.0 | 4.03e-01 | 100.0% | 33.3% |
| 3296865 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.65 | 57.0 | 4.54e-01 | 100.0% | 52.4% |
| 3520583 | 219.1.1.19 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C54 | 0.64 | 54.0 | 3.42e-01 | 100.0% | 20.8% |
| 5034351 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 51.0 | 5.06e-01 | 94.2% | 98.2% |
| 3507003 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 53.0 | 4.77e-01 | 98.1% | 93.3% |
| 3786430 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 48.0 | 4.89e-01 | 96.2% | 92.0% |
| 3784334 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.63 | 48.0 | 4.67e-01 | 96.2% | 76.7% |
| 3217772 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 55.0 | 4.67e-01 | 100.0% | 85.9% |
| 4064452 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.62 | 52.0 | 3.92e-01 | 100.0% | 37.1% |
| 3965134 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.60 | 51.0 | 4.04e-01 | 100.0% | 93.9% |
| 4024730 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.53 | 43.0 | 3.72e-01 | 92.3% | 85.9% |
| 3388883 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.53 | 44.0 | 2.93e-01 | 100.0% | 54.2% |
D2
medium
residues 1-47_162-179
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27470.1 best | TfpB | 79.9 | 3.60e-22 | 78.5% | 27.9% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ze7A02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.77 | 39.0 | 3.32e-01 | 95.4% | 31.4% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.71 | 49.0 | 3.95e-01 | 72.3% | 66.1% |
| 2jrmA00 | 1.10.10.620 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain | 0.67 | 49.0 | 5.14e-01 | 86.2% | 85.0% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.65 | 44.0 | 4.24e-01 | 72.3% | 93.5% |
| 3wvoC02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.64 | 56.0 | 4.45e-01 | 96.9% | 86.9% |
| 2qe9B01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.64 | 44.0 | 3.28e-01 | 72.3% | 95.6% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 50.0 | 5.02e-01 | 83.1% | 86.4% |
| 1nu7D02 | 1.20.120.760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle, domain 2 | 0.63 | 52.0 | 4.20e-01 | 92.3% | 92.2% |
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.60 | 47.0 | 3.70e-01 | 84.6% | 73.7% |
| 3iylB02 | 1.10.2050.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 | 0.58 | 44.0 | 3.49e-01 | 81.5% | 83.6% |
| 2nsfA01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.58 | 49.0 | 3.66e-01 | 92.3% | 50.9% |
| 4lhpF00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.57 | 43.0 | 3.38e-01 | 80.0% | 75.4% |
| 3um7A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 48.0 | 4.16e-01 | 100.0% | 68.0% |
| 3euaA02 | 1.10.10.2240 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 45.0 | 4.57e-01 | 93.8% | 95.3% |
| 8aigA01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.54 | 38.0 | 3.61e-01 | 73.8% | 80.5% |
| 4c2mA06 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.53 | 41.0 | 3.16e-01 | 87.7% | 88.4% |
| 3dkaB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.53 | 41.0 | 3.34e-01 | 87.7% | 51.1% |
| 3cdlB02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 42.0 | 3.35e-01 | 89.2% | 73.7% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.51 | 43.0 | 3.87e-01 | 93.8% | 84.8% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 39.0 | 3.66e-01 | 81.5% | 82.3% |
| 1n1fA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 38.0 | 3.03e-01 | 84.6% | 83.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3270180 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.90 | 47.0 | 4.17e-01 | 93.8% | 38.9% |
| 4029754 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.77 | 53.0 | 4.86e-01 | 72.3% | 58.8% |
| 4514462 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.76 | 52.0 | 4.51e-01 | 72.3% | 90.0% |
| 4666974 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.73 | 50.0 | 3.56e-01 | 72.3% | 28.9% |
| 4407662 | 6028.1.1.1 ↗ | alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor › RMF | 0.71 | 48.0 | 5.03e-01 | 75.4% | 76.7% |
| 4964984 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.68 | 54.0 | 4.58e-01 | 87.7% | 54.0% |
| 3933902 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.66 | 48.0 | 2.80e-01 | 100.0% | 9.5% |
| 3174080 | 6169.1.1.0 ↗ | extended segments › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 | 0.66 | 52.0 | 4.64e-01 | 89.2% | 61.1% |
| 5078272 | 3542.1.1.1 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin | 0.65 | 55.0 | 3.55e-01 | 92.3% | 51.6% |
| 3816176 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.65 | 53.0 | 4.41e-01 | 86.2% | 61.9% |
| 3264346 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.65 | 48.0 | 3.21e-01 | 76.9% | 50.5% |
| 4979784 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.64 | 50.0 | 3.37e-01 | 83.1% | 26.5% |
| 4982912 | 7014.1.1.0 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain | 0.62 | 48.0 | 4.35e-01 | 86.2% | 61.1% |
| 3996900 | 601.25.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain | 0.62 | 47.0 | 3.77e-01 | 81.5% | 68.5% |
| 4030141 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.62 | 53.0 | 4.55e-01 | 100.0% | 88.2% |
| 3961186 | 103.9.1.0 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain | 0.62 | 50.0 | 4.25e-01 | 87.7% | 56.0% |
| 3939371 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.61 | 47.0 | 3.32e-01 | 87.7% | 73.9% |
| 3854050 | 604.12.1.43 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Tim17 | 0.59 | 53.0 | 4.10e-01 | 98.5% | 60.0% |
| 3218491 | 5054.1.1.70 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Yip1 | 0.54 | 49.0 | 3.58e-01 | 100.0% | 56.5% |
| 3279139 | 191.1.1.35 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_35 | 0.53 | 41.0 | 3.38e-01 | 86.2% | 76.0% |
| 4963278 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.51 | 39.0 | 4.03e-01 | 81.5% | 100.0% |
D3
medium
residues 82-161