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LR595866.1__VUD36917.1__X__00048
Bact-VirLR595866.1__VUD36917.1__X__00048
Identity
- Accession:
- LR595866 ↗
- Kingdom:
- phage
Quality
85.0
mean pLDDT
Taxonomy
TaxID: 2847057
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-143_253-282
Domain cluster:
rep: KU517658.1__AMB17415.1__HMT_3__00003__D3-163_284-310
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jpiA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.63 | 36.0 | 4.58e-01 | 77.8% | 99.0% |
| 3b82A06 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 35.0 | 4.13e-01 | 86.5% | 81.0% |
| 2yh6D00 | 3.30.530.50 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.59 | 38.0 | 4.56e-01 | 70.8% | 98.2% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 26.0 | 3.47e-01 | 83.0% | 75.8% |
| 4r7kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 44.0 | 4.45e-01 | 79.5% | 98.2% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.53 | 45.0 | 4.61e-01 | 99.4% | 92.4% |
| 1vr8A00 | 3.40.1000.20 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like | 0.52 | 33.0 | 3.71e-01 | 99.4% | 82.2% |
| 2yweA04 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 32.0 | 3.85e-01 | 83.6% | 93.9% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 28.0 | 3.61e-01 | 78.9% | 100.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5036533 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.68 | 61.0 | 5.53e-01 | 94.2% | 97.3% |
| 3319618 | 331.3.1.40 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1997 | 0.63 | 45.0 | 4.41e-01 | 74.3% | 96.3% |
| 3425333 | 331.3.1.40 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1997 | 0.59 | 43.0 | 4.15e-01 | 74.3% | 93.3% |
| 4938102 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.59 | 26.0 | 3.88e-01 | 74.9% | 100.0% |
| 3446652 | 331.3.1.40 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1997 | 0.58 | 42.0 | 4.12e-01 | 73.7% | 90.8% |
| 3512817 | 304.107.1.10 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf | 0.57 | 36.0 | 4.14e-01 | 89.5% | 87.2% |
| 4353273 | 331.9.1.10 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF28631 | 0.56 | 43.0 | 4.56e-01 | 77.8% | 89.3% |
| 3672678 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.55 | 26.0 | 3.48e-01 | 98.8% | 85.9% |
| 3808166 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 26.0 | 3.38e-01 | 99.4% | 82.2% |
| 3596985 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.53 | 34.0 | 4.06e-01 | 87.7% | 95.7% |
| 3997170 | 9.1.1.48 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 | 0.53 | 37.0 | 3.59e-01 | 70.8% | 64.9% |
| 5042199 | 2003.1.2.300 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat | 0.52 | 39.0 | 3.04e-01 | 97.1% | 36.6% |
| 7054 | 881.2.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like › DUF3242 | 0.51 | 33.0 | 3.73e-01 | 99.4% | 87.4% |
| 3593728 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 40.0 | 4.21e-01 | 98.8% | 93.3% |
| 5076453 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.50 | 28.0 | 3.37e-01 | 83.0% | 80.9% |
D2
high
residues 146-249
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.59 | 38.0 | 4.37e-01 | 100.0% | 93.1% |
| 1uwkB01 | 3.40.1770.10 | Alpha Beta › 3-Layer(aba) Sandwich › Urocanase fold › Urocanase superfamily | 0.54 | 46.0 | 3.30e-01 | 98.1% | 62.3% |
| 4fd4A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 47.0 | 3.71e-01 | 99.0% | 70.3% |
| 4ezcB00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.51 | 38.0 | 2.70e-01 | 78.8% | 87.6% |
| 3kbgA02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.51 | 24.0 | 3.38e-01 | 96.2% | 90.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3897876 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.61 | 44.0 | 3.47e-01 | 76.0% | 38.0% |
| 5000975 | 321.2.1.1 ↗ | a+b two layers › Glutamine synthetase-like › C-terminal domain in urocanase › C-terminal domain in urocanase › Urocanase_C | 0.57 | 45.0 | 3.63e-01 | 84.6% | 69.0% |
| 4979086 | 321.2.1.0 ↗ | a+b two layers › Glutamine synthetase-like › C-terminal domain in urocanase › C-terminal domain in urocanase | 0.57 | 44.0 | 3.57e-01 | 84.6% | 69.4% |
| 4355231 | 321.2.1.1 ↗ | a+b two layers › Glutamine synthetase-like › C-terminal domain in urocanase › C-terminal domain in urocanase › Urocanase_C | 0.56 | 43.0 | 3.57e-01 | 84.6% | 70.7% |
| 3734784 | 10.9.1.3 ↗ | beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › Tyrosinase_C | 0.56 | 46.0 | 3.94e-01 | 91.3% | 85.7% |
| 3360084 | 2005.1.1.43 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd | 0.54 | 39.0 | 3.31e-01 | 75.0% | 86.9% |
| 4933948 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 38.0 | 4.18e-01 | 98.1% | 92.9% |
| 4331294 | 3325.1.1.1 ↗ | a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrA_inter | 0.52 | 46.0 | 4.45e-01 | 100.0% | 95.8% |