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LR595891.1__VUD40217.1__X__00056
Bact-VirLR595891.1__VUD40217.1__X__00056
Identity
- Accession:
- LR595891 ↗
- Kingdom:
- phage
Quality
82.8
mean pLDDT
Taxonomy
TaxID: 2844224
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 17-72
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13935.12 best | Ead_Ea22 | 35.7 | 1.60e-08 | 98.2% | 38.1% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4huzA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.72 | 49.0 | 3.56e-01 | 100.0% | 26.5% |
| 4q66D01 | 6.20.120.50 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.72 | 40.0 | 3.63e-01 | 94.6% | 41.1% |
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 40.0 | 4.17e-01 | 100.0% | 64.0% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.65 | 41.0 | 3.85e-01 | 100.0% | 54.5% |
| 4gyiA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 45.0 | 3.91e-01 | 82.1% | 86.7% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.61 | 46.0 | 3.59e-01 | 100.0% | 35.9% |
| 3bm4A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.60 | 40.0 | 2.72e-01 | 89.3% | 19.8% |
| 5xu6C01 | 3.30.200.110 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe | 0.58 | 40.0 | 3.26e-01 | 94.6% | 38.0% |
| 2w4yA00 | 2.40.160.220 | Mainly Beta › Beta Barrel › Porin › | 0.58 | 43.0 | 3.39e-01 | 98.2% | 37.7% |
| 2qlvB02 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.57 | 34.0 | 3.94e-01 | 82.1% | 89.5% |
| 1kutB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 41.0 | 3.59e-01 | 80.4% | 74.2% |
| 1vhzA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.56 | 37.0 | 2.60e-01 | 87.5% | 21.3% |
| 7y8sB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 46.0 | 4.03e-01 | 100.0% | 83.9% |
| 2x0qA01 | 3.30.310.280 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.53 | 40.0 | 3.17e-01 | 94.6% | 35.3% |
| 1cauA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 37.0 | 2.70e-01 | 83.9% | 23.8% |
| 4n5uA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 45.0 | 3.69e-01 | 100.0% | 75.9% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.53 | 36.0 | 3.70e-01 | 98.2% | 75.0% |
| 1n7vA01 | 2.105.10.10 | Mainly Beta › 3 Propeller › Pseudo beta propeller › Pseudo beta propeller | 0.52 | 41.0 | 3.00e-01 | 100.0% | 29.4% |
| 7zxkB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 44.0 | 3.81e-01 | 98.2% | 87.1% |
| 1vr5A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 36.0 | 2.67e-01 | 83.9% | 27.9% |
| 2e4mC00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.52 | 43.0 | 3.33e-01 | 100.0% | 69.2% |
| 3tfzB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 42.0 | 3.16e-01 | 98.2% | 69.1% |
| 7d8gA01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.51 | 41.0 | 3.13e-01 | 100.0% | 87.4% |
| 6xaxA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 43.0 | 3.85e-01 | 100.0% | 82.4% |
| 2edyA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 42.0 | 3.55e-01 | 100.0% | 70.9% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1712014 | 375.1.1.66 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TOP1_ZnF | 0.71 | 49.0 | 4.74e-01 | 100.0% | 63.1% |
| 5002760 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.71 | 45.0 | 4.17e-01 | 100.0% | 51.4% |
| 3258369 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 44.0 | 5.00e-01 | 98.2% | 100.0% |
| 3648057 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.65 | 51.0 | 3.14e-01 | 100.0% | 13.6% |
| 3586304 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.61 | 54.0 | 4.10e-01 | 100.0% | 52.3% |
| 3220478 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.60 | 52.0 | 4.36e-01 | 100.0% | 65.0% |
| 3600441 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 49.0 | 3.39e-01 | 100.0% | 49.0% |
| 4024915 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.57 | 41.0 | 3.88e-01 | 100.0% | 64.6% |
| 3431969 | 708.1.1.8 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 | 0.57 | 49.0 | 3.93e-01 | 100.0% | 63.5% |
| 3701350 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 48.0 | 3.38e-01 | 100.0% | 52.6% |
| 3908608 | 6070.1.1.2 ↗ | few secondary structure elements › Sortilin C-terminal domain › Sortilin C-terminal domain › Sortilin C-terminal domain › ELAPOR1_C | 0.56 | 40.0 | 4.16e-01 | 89.3% | 88.0% |
| 2650968 | 11.46.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C-domain of Mg adhesin P110 › C-domain of Mg adhesin P110 › MGP3_C | 0.55 | 48.0 | 3.73e-01 | 100.0% | 52.8% |
| 4986992 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.54 | 41.0 | 2.47e-01 | 98.2% | 9.8% |
| 3576877 | 389.1.3.21 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_ELAPOR1_6th | 0.53 | 40.0 | 3.06e-01 | 87.5% | 32.0% |
| 3424637 | 4.1.1.313 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7912 | 0.53 | 43.0 | 3.80e-01 | 100.0% | 71.6% |
| 3948881 | 223.1.1.4 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › IclR | 0.52 | 40.0 | 3.09e-01 | 96.4% | 94.1% |
| 3313139 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.52 | 44.0 | 3.05e-01 | 100.0% | 29.1% |
| 3486056 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 45.0 | 3.34e-01 | 100.0% | 44.4% |
| 3191276 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.51 | 42.0 | 2.61e-01 | 96.4% | 37.8% |
| 3944715 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.51 | 41.0 | 2.60e-01 | 96.4% | 35.1% |
| 4193599 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 43.0 | 3.46e-01 | 100.0% | 49.5% |
| 3787715 | 375.1.1.228 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29101 | 0.51 | 40.0 | 4.20e-01 | 98.2% | 100.0% |
| 3995370 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.50 | 43.0 | 3.68e-01 | 100.0% | 77.9% |