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LR596902.1__VUE37343.1__X__00007

Bact-Vir

LR596902.1__VUE37343.1__X__00007

Identity

Accession:
LR596902 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseburia_phage_Jekyll

TaxID: 2570912

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 417-524
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dl5A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.78 73.0 4.79e-01 100.0% 76.0%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.78 71.0 4.87e-01 98.1% 60.3%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.77 71.0 4.32e-01 100.0% 33.5%
5dl7A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.77 71.0 4.71e-01 100.0% 49.8%
2vckA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.76 60.0 4.71e-01 81.5% 59.6%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.76 69.0 4.69e-01 96.3% 61.3%
1v7wA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.67 56.0 3.96e-01 88.0% 93.4%
1cb8A02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.66 48.0 3.58e-01 74.1% 100.0%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.65 56.0 4.25e-01 93.5% 70.4%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 45.0 3.21e-01 72.2% 85.3%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.63 48.0 3.79e-01 78.7% 51.6%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.63 58.0 4.28e-01 100.0% 78.1%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.63 50.0 4.07e-01 85.2% 84.3%
2wvxA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 44.0 3.16e-01 71.3% 81.3%
6f91A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 43.0 3.20e-01 71.3% 93.5%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.62 51.0 4.40e-01 88.9% 65.3%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.62 45.0 3.83e-01 75.0% 86.6%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 45.0 3.99e-01 75.9% 63.5%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.62 45.0 3.36e-01 75.0% 98.1%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 46.0 4.11e-01 80.6% 78.3%
1x7dB01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.60 43.0 3.65e-01 73.1% 66.3%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 44.0 3.94e-01 75.9% 64.9%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.60 41.0 3.85e-01 71.3% 86.7%
1rwhA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 46.0 3.48e-01 84.3% 95.2%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.58 48.0 3.13e-01 90.7% 85.5%
1txkA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 49.0 3.45e-01 94.4% 88.4%
6gh3A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.58 49.0 3.52e-01 93.5% 90.7%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.58 45.0 4.00e-01 83.3% 78.3%
3nreA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 41.0 3.00e-01 75.0% 67.7%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 39.0 3.25e-01 70.4% 82.1%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 43.0 3.76e-01 81.5% 95.7%
5swiD01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 41.0 3.20e-01 78.7% 90.2%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 42.0 3.00e-01 82.4% 88.2%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 3.42e-01 76.9% 66.3%
1o7dD01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.54 41.0 3.08e-01 77.8% 71.3%
1k38A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 42.0 3.25e-01 82.4% 70.3%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 39.0 3.27e-01 75.0% 61.7%
1pu4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.53 46.0 3.10e-01 95.4% 76.9%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.34e-01 87.0% 77.4%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 41.0 3.15e-01 85.2% 48.8%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.51 38.0 3.17e-01 77.8% 77.8%
1ydwA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 41.0 3.37e-01 95.4% 45.1%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.63e-01 95.4% 62.5%
3auxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.69e-01 77.8% 30.5%
7cu8E01 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.51 37.0 3.19e-01 77.8% 80.2%
8bddA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 43.0 3.02e-01 93.5% 75.6%
6f90A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 40.0 2.99e-01 83.3% 87.8%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.50 41.0 3.48e-01 88.0% 58.2%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3228089 5087.1.1.0 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.85 77.0 6.67e-01 94.4% 78.7%
4014909 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.81 63.0 4.94e-01 80.6% 96.2%
4349531 4252.1.1.3 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.79 58.0 4.61e-01 76.9% 96.2%
3984821 5084.2.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › OMPT-like › OMPT-like › Omptin 0.78 61.0 4.31e-01 82.4% 69.5%
346609 867.1.1.2 ↗ a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.77 60.0 4.71e-01 81.5% 59.6%
3992540 79.1.1.24 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Mlf1IP 0.77 54.0 5.74e-01 72.2% 93.7%
4367390 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.74 67.0 4.35e-01 99.1% 37.8%
4484000 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.73 66.0 4.37e-01 100.0% 40.9%
3981844 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 64.0 4.17e-01 99.1% 39.6%
4880357 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.70 52.0 4.81e-01 76.9% 87.3%
4606000 4252.1.1.3 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.69 58.0 4.58e-01 88.9% 94.0%
3501309 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.69 63.0 5.73e-01 99.1% 74.3%
3581297 5084.5.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.69 64.0 5.03e-01 100.0% 57.7%
3642603 5084.5.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.69 63.0 4.53e-01 100.0% 40.3%
3827592 5084.5.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.69 58.0 5.04e-01 89.8% 76.6%
3736649 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.69 48.0 3.87e-01 71.3% 53.6%
3594404 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.68 63.0 4.59e-01 100.0% 42.5%
3955953 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.67 46.0 3.42e-01 70.4% 97.1%
3598820 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.67 60.0 4.41e-01 96.3% 46.5%
3385986 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.66 60.0 4.91e-01 100.0% 66.2%
3667729 5084.5.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.66 59.0 4.39e-01 98.1% 46.9%
2717534 12.3.1.31 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YgjK_N 0.65 47.0 3.46e-01 75.0% 87.1%
4294796 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.65 48.0 4.12e-01 76.9% 69.4%
4248683 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.65 49.0 4.04e-01 77.8% 64.3%
4177915 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.65 48.0 4.08e-01 76.9% 69.4%
4596124 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.65 47.0 4.09e-01 75.9% 69.1%
3344424 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 59.0 4.20e-01 100.0% 61.3%
4335700 5084.5.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › MDM10 0.64 57.0 4.13e-01 99.1% 39.9%
3981236 5084.5.4.6 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › TraF_2 0.64 56.0 4.15e-01 97.2% 61.7%
3459971 5084.5.3.9 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › PF28611 0.64 59.0 4.20e-01 99.1% 38.3%
3936801 10.1.1.91 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29324 0.63 46.0 3.40e-01 75.0% 44.0%
3702318 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.63 49.0 3.75e-01 81.5% 86.1%
4507201 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.63 44.0 3.43e-01 72.2% 77.3%
3506427 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.62 48.0 4.61e-01 80.6% 100.0%
4992003 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.62 43.0 3.96e-01 70.4% 60.7%
3866573 12.3.1.42 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.60 45.0 3.28e-01 78.7% 72.2%
4086880 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.60 48.0 4.25e-01 83.3% 99.3%
3932406 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.58 48.0 3.45e-01 88.9% 93.3%
4995046 12.3.1.15 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › AmyA-gluTrfs_C 0.58 43.0 3.18e-01 78.7% 79.2%
4806694 1033.1.1.3 ↗ beta duplicates or obligate multimers › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › TcdA_TcdB_pore, PF30720 0.57 48.0 3.77e-01 89.8% 85.8%
3394382 12.3.1.42 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.57 52.0 3.56e-01 100.0% 65.4%
4976692 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.56 45.0 3.52e-01 87.0% 55.1%
3412380 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.56 47.0 3.39e-01 89.8% 90.5%
4662378 1032.1.1.0 ↗ alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain 0.56 49.0 2.92e-01 100.0% 21.8%
3399449 883.1.1.32 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP, Grp7_allergen 0.55 43.0 2.97e-01 83.3% 82.3%
4527800 1033.1.1.3 ↗ beta duplicates or obligate multimers › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › TcdA_TcdB_pore, PF30720 0.54 49.0 2.88e-01 98.1% 60.1%
3254506 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.54 41.0 3.61e-01 80.6% 92.1%
4961667 5084.1.1.45 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF26421 0.52 39.0 3.89e-01 80.6% 86.1%
D2 high residues 666-716
PDB
D3 high residues 745-832
PDB
Domain cluster: rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 28.0 3.00e-06 48.9% 69.0%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gudA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 71.0 6.34e-01 92.0% 91.6%
2r1fA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.69 28.0 4.08e-01 90.9% 84.6%
4l80D00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.68 39.0 2.62e-01 95.5% 14.2%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 40.0 3.72e-01 98.9% 57.8%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 4.69e-01 97.7% 94.2%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 49.0 4.25e-01 100.0% 69.7%
6xkyA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.56 48.0 3.83e-01 98.9% 84.0%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 49.0 4.71e-01 100.0% 95.0%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.55 33.0 3.78e-01 84.1% 86.4%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.55 24.0 2.93e-01 73.9% 60.3%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 48.0 4.27e-01 100.0% 76.4%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 4.00e-01 96.6% 70.7%
3bexA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 36.0 3.29e-01 94.3% 54.5%
2ctfA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 32.0 3.09e-01 97.7% 52.9%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.77e-01 95.5% 62.0%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 4.17e-01 97.7% 93.4%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 4.15e-01 89.8% 97.8%
3venA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 46.0 3.38e-01 97.7% 60.1%
2qpqA01 3.40.190.150 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bordetella uptake gene, domain 1 0.51 40.0 3.22e-01 84.1% 89.5%
2xzmG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.51 38.0 3.05e-01 81.8% 99.5%
6ks6q01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.51 40.0 2.92e-01 88.6% 33.7%
2xzmT00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.69e-01 96.6% 91.3%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.51 39.0 3.98e-01 85.2% 98.9%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.50e-01 78.4% 90.6%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 42.0 4.08e-01 98.9% 97.1%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944436 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.84 77.0 7.12e-01 100.0% 79.1%
3705003 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.64 30.0 2.21e-01 79.5% 19.1%
3232477 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.59 50.0 4.86e-01 95.5% 87.0%
4982318 3501.1.1.1 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.57 33.0 3.95e-01 96.6% 85.0%
4929882 327.11.2.82 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 0.54 34.0 3.81e-01 93.2% 86.2%
3714819 593.1.1.0 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.52 42.0 3.35e-01 89.8% 52.6%
3759757 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.52 40.0 3.81e-01 81.8% 80.0%
3195256 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.52 33.0 3.40e-01 98.9% 67.1%
4083451 192.2.1.20 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ASNSD1-SEP 0.52 39.0 4.08e-01 100.0% 87.5%
5004231 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.51 39.0 3.85e-01 85.2% 95.8%
3401453 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.51 38.0 3.97e-01 89.8% 86.3%
4987009 3837.1.1.1 ↗ alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 0.50 44.0 3.67e-01 98.9% 56.0%
3406351 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.50 41.0 3.81e-01 98.9% 70.0%
4647466 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.50 43.0 3.04e-01 100.0% 48.9%
D4 medium residues 1-243_378-397
PDB
Domain cluster: rep: MZ503613.1__QYC52382.1__X__00037__D1-189
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.68 28.0 4.32e-01 91.6% 91.0%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 27.0 4.10e-01 92.4% 87.2%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 26.0 4.09e-01 87.1% 99.0%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.54 20.0 2.90e-01 81.0% 68.8%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.52 34.0 4.20e-01 93.9% 98.9%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.51 34.0 4.16e-01 94.3% 96.7%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 28.0 3.77e-01 89.7% 97.9%
3jzyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 22.0 3.09e-01 93.9% 82.3%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943172 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 31.0 5.30e-01 75.7% 100.0%
77 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.68 28.0 4.34e-01 91.6% 91.8%
160389 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.67 28.0 4.06e-01 92.0% 82.9%
4260084 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 28.0 4.13e-01 95.4% 86.7%
2137681 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 26.0 4.01e-01 92.4% 89.9%
4936008 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.63 24.0 3.96e-01 87.8% 94.7%
3237729 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 25.0 3.99e-01 95.1% 93.3%
3219578 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.60 18.0 3.08e-01 71.1% 72.6%
3258833 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 18.0 3.09e-01 71.1% 88.4%
D5 medium residues 244-287_327-377
PDB
Domain cluster: representative
D6 medium residues 533-597
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4maaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 59.0 4.34e-01 100.0% 93.5%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 54.0 4.05e-01 100.0% 88.3%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.61 43.0 3.64e-01 75.4% 85.3%
1edzA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 46.0 3.63e-01 89.2% 37.8%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 50.0 4.30e-01 98.5% 75.9%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 44.0 2.73e-01 83.1% 15.0%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 46.0 3.85e-01 90.8% 52.6%
2q2eB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 44.0 3.14e-01 90.8% 41.6%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 2.92e-01 75.4% 59.7%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 47.0 4.16e-01 98.5% 71.0%
6pzjA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 40.0 3.23e-01 83.1% 55.4%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.54 37.0 3.45e-01 72.3% 81.6%
3ghmA03 2.60.120.830 Mainly Beta › Sandwich › Jelly Rolls › 0.53 36.0 2.90e-01 72.3% 68.3%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 45.0 3.72e-01 100.0% 71.3%
2h2yA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 41.0 3.47e-01 95.4% 49.1%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.52 43.0 3.41e-01 92.3% 94.8%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 43.0 2.91e-01 95.4% 70.1%
3fynA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 45.0 3.41e-01 96.9% 48.0%
1usgA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 41.0 3.30e-01 92.3% 95.8%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 44.0 3.88e-01 96.9% 72.6%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 39.0 3.39e-01 87.7% 54.0%
2oa9B02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.50 42.0 3.53e-01 100.0% 63.0%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 41.0 3.41e-01 100.0% 72.1%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026468 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.69 60.0 4.31e-01 98.5% 88.9%
3728191 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 55.0 4.03e-01 89.2% 53.9%
5002640 3761.1.1.1 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.67 48.0 5.34e-01 83.1% 98.0%
5028252 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.66 50.0 4.30e-01 84.6% 53.0%
3837554 4126.1.1.1 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA 0.64 54.0 3.80e-01 95.4% 77.7%
3389277 2007.1.2.30 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › IR75A_N 0.64 55.0 4.13e-01 100.0% 89.1%
4025734 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.64 52.0 3.62e-01 90.8% 32.0%
3420356 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.64 48.0 3.82e-01 83.1% 40.0%
4082864 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 56.0 4.76e-01 98.5% 66.7%
3993633 2492.1.1.42 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB, MitMem_reg 0.63 53.0 3.80e-01 98.5% 75.3%
4044986 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.63 47.0 4.49e-01 78.5% 81.3%
3519117 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 41.0 2.99e-01 70.8% 35.3%
162286 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.60 52.0 4.27e-01 98.5% 64.8%
296396 372.1.1.1 ↗ a+b complex topology › RNase A-like › RNase A-like › RNase A-like › RnaseA 0.60 46.0 3.95e-01 83.1% 73.3%
3174263 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 47.0 2.90e-01 86.2% 43.1%
3516794 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.59 48.0 3.88e-01 95.4% 46.4%
4230569 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 46.0 3.09e-01 89.2% 83.0%
3214289 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 49.0 4.14e-01 98.5% 76.5%
3508119 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.57 48.0 4.02e-01 96.9% 65.0%
4033230 2008.1.1.155 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc 0.57 47.0 3.69e-01 92.3% 86.9%
3990088 2008.1.1.155 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc 0.57 48.0 3.56e-01 95.4% 72.6%
3804236 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.26e-01 78.5% 91.4%
5061894 1.1.12.0 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins 0.56 44.0 3.80e-01 84.6% 76.0%
3265841 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.56 37.0 3.22e-01 87.7% 45.0%
4027701 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 39.0 3.40e-01 73.8% 56.0%
3509348 214.1.1.15 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063, DUF7145 0.56 45.0 3.06e-01 98.5% 48.3%
4266767 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.55 44.0 4.31e-01 87.7% 100.0%
3196992 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.55 44.0 3.17e-01 92.3% 39.5%
3271880 223.2.1.23 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.55 40.0 2.99e-01 81.5% 29.5%
3588618 2008.1.1.155 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc 0.55 46.0 3.61e-01 96.9% 85.3%
3517867 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.55 43.0 3.61e-01 93.8% 49.2%
5073026 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 38.0 4.18e-01 75.4% 96.0%
3703932 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 40.0 4.18e-01 90.8% 90.0%
3671149 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 43.0 2.74e-01 96.9% 81.0%
4025681 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.18e-01 89.2% 80.0%
3544943 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.51 35.0 3.14e-01 72.3% 76.0%
4095262 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.51 36.0 2.98e-01 73.8% 73.9%
5034142 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 39.0 2.49e-01 87.7% 34.1%
3937921 5.1.3.170 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_IFT140_2nd 0.50 38.0 2.52e-01 87.7% 23.9%
3188230 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 39.0 2.58e-01 87.7% 37.7%
3423257 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.50 38.0 2.47e-01 87.7% 30.8%