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LR596902.1__VUE37344.1__X__00008

Bact-Vir

LR596902.1__VUE37344.1__X__00008

Identity

Accession:
LR596902 ↗
Kingdom:
phage

Quality

96.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-117
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20458.4 best DUF6711 133.9 6.60e-39 100.0% 80.7%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 22.0 2.95e-01 92.7% 61.0%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 33.0 3.49e-01 98.2% 69.1%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942828 1.1.13.39 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.66 58.0 5.37e-01 99.1% 78.6%
3681987 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 34.0 3.11e-01 96.4% 44.0%
4862327 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.54 40.0 4.37e-01 98.2% 97.7%
4957071 325.1.5.1 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal protein L10e › Ribosomal_L16 0.52 38.0 3.86e-01 99.1% 80.0%
5057906 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.51 40.0 4.07e-01 98.2% 87.6%
3624857 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.50 40.0 4.11e-01 95.5% 92.4%