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LR596902.1__VUE37383.1__X__00041

Bact-Vir

LR596902.1__VUE37383.1__X__00041

Identity

Accession:
LR596902 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-52
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1peqA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.71 50.0 2.87e-01 100.0% 7.5%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.65 47.0 3.80e-01 83.3% 71.0%
2kddA00 6.10.140.560 Special › Helix non-globular › Helix Hairpins › 0.62 53.0 5.03e-01 100.0% 82.5%
5unhA02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.61 50.0 3.07e-01 89.6% 31.6%
2f48A01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 49.0 3.09e-01 97.9% 58.2%
4zyaB00 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.58 49.0 4.19e-01 93.8% 90.8%
2qvpC00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 50.0 3.12e-01 100.0% 74.7%
2ii3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.55 47.0 3.06e-01 97.9% 70.1%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 44.0 3.89e-01 97.9% 63.6%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 39.0 3.73e-01 85.4% 70.9%
7sbeA01 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.52 44.0 2.91e-01 100.0% 35.4%
2fh5B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 2.86e-01 97.9% 73.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3463976 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.78 56.0 4.15e-01 81.2% 30.8%
3489855 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 53.0 3.96e-01 75.0% 69.1%
3815755 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.69 49.0 3.38e-01 83.3% 21.8%
3882962 904.1.1.22 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box, TRIM_CC 0.67 49.0 3.14e-01 77.1% 22.9%
3455239 292.2.1.12 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Calmod_bind_C 0.64 51.0 4.76e-01 95.8% 70.0%
3540802 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.64 46.0 3.88e-01 77.1% 58.7%
3495874 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 52.0 4.97e-01 89.6% 87.3%
3251564 2002.1.1.234 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2+Meth_synt_1 0.62 55.0 3.16e-01 100.0% 23.1%
3246861 7564.1.1.1 a/b three-layered sandwiches › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Flavoprotein 0.59 53.0 3.45e-01 100.0% 90.5%
4936364 2007.13.1.1 a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domains in magnesium chelatase catalytic subunit › Rossmann-like domains in magnesium chelatase catalytic subunit › CobN-Mg_chel 0.59 50.0 3.30e-01 95.8% 53.0%
3556596 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.58 49.0 4.01e-01 95.8% 84.4%
3543649 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.57 41.0 2.86e-01 100.0% 23.1%
5050812 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.57 44.0 2.76e-01 83.3% 17.3%
3271984 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.57 46.0 3.30e-01 100.0% 30.3%
3724474 207.1.1.85 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.57 44.0 2.56e-01 87.5% 19.4%
3414136 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.54 44.0 3.23e-01 95.8% 78.6%
4061362 327.4.1.1 a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.53 47.0 3.66e-01 97.9% 69.0%
5000911 187.1.1.1 alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_8 0.50 45.0 3.12e-01 100.0% 98.1%
D2 high residues 64-154
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 44.0 5.55e-01 84.6% 98.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 42.0 4.94e-01 85.7% 76.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 40.0 4.85e-01 81.3% 79.7%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 41.0 5.14e-01 82.4% 100.0%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 4.68e-01 96.7% 65.0%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.68 38.0 4.55e-01 84.6% 83.3%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 4.72e-01 89.0% 78.9%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 40.0 4.55e-01 72.5% 80.6%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.47e-01 85.7% 83.6%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 48.0 4.05e-01 84.6% 53.1%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.62e-01 82.4% 93.0%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 35.0 4.00e-01 89.0% 91.5%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 37.0 4.20e-01 86.8% 91.0%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.56 36.0 3.46e-01 85.7% 55.0%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 4.12e-01 90.1% 72.7%
3mtsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 35.0 4.11e-01 100.0% 91.9%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.54 37.0 4.00e-01 84.6% 84.2%
1xqbA01 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.54 38.0 3.64e-01 86.8% 61.5%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 31.0 3.65e-01 86.8% 83.6%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.53 38.0 4.15e-01 85.7% 91.9%
1y0gA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.53 40.0 3.37e-01 83.5% 94.1%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 38.0 3.62e-01 76.9% 79.2%
1ia9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 42.0 3.65e-01 91.2% 93.8%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026958 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 45.0 5.70e-01 83.5% 89.1%
3848399 4.8.1.24 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.79 49.0 5.50e-01 84.6% 81.4%
3932647 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 47.0 4.93e-01 85.7% 68.2%
3918299 4.1.1.376 beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.75 45.0 5.01e-01 82.4% 77.1%
1567496 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.75 43.0 5.26e-01 85.7% 91.2%
3699995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 45.0 5.07e-01 85.7% 78.6%
3174977 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 40.0 4.01e-01 85.7% 50.5%
4124092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 42.0 4.68e-01 84.6% 71.4%
3656401 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 44.0 4.81e-01 86.8% 72.0%
4069543 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 43.0 4.68e-01 87.9% 70.7%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.72 46.0 5.02e-01 95.6% 78.7%
3740208 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.72 42.0 4.86e-01 85.7% 81.5%
3812766 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 47.0 5.32e-01 85.7% 88.6%
3905549 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 43.0 4.12e-01 87.9% 52.4%
5043697 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 40.0 4.66e-01 84.6% 78.5%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 44.0 3.54e-01 86.8% 32.2%
3876680 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 44.0 4.32e-01 86.8% 58.0%
5032809 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.70 41.0 3.60e-01 84.6% 40.0%
4565130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 44.0 4.34e-01 89.0% 61.1%
3707346 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 49.0 5.12e-01 84.6% 80.7%
3703970 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 48.0 4.60e-01 89.0% 62.9%
147797 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.68 44.0 4.96e-01 90.1% 86.8%
4118552 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 40.0 4.42e-01 84.6% 72.0%
4523548 4.8.1.35 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.68 46.0 4.81e-01 80.2% 75.3%
3570368 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 41.0 4.00e-01 87.9% 55.0%
2978978 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 45.0 4.93e-01 85.7% 84.0%
3286662 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 40.0 3.88e-01 84.6% 54.0%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.66 40.0 4.38e-01 86.8% 73.3%
3743614 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.66 39.0 4.64e-01 84.6% 88.3%
4027263 4.1.1.104 beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.66 40.0 3.65e-01 85.7% 45.8%
5066224 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.64 39.0 3.96e-01 85.7% 60.0%
4220608 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.64 39.0 4.32e-01 91.2% 76.0%
4422252 4.1.1.455 beta barrels › SH3 › SH3 › SH3 › DSRB 0.64 39.0 4.62e-01 82.4% 93.3%
3407980 3775.1.1.1 beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 0.64 44.0 2.86e-01 71.4% 81.2%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.64 42.0 4.40e-01 84.6% 72.9%
3913060 3775.1.1.1 beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 0.63 43.0 2.84e-01 70.3% 43.0%
3511375 4.1.1.349 beta barrels › SH3 › SH3 › SH3 › ROF 0.63 38.0 4.00e-01 87.9% 64.7%
3953109 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 42.0 4.18e-01 84.6% 65.3%
3281271 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 40.0 4.07e-01 84.6% 65.6%
3998766 3775.1.1.1 beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 0.62 43.0 2.85e-01 71.4% 73.9%
3279470 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 39.0 3.92e-01 84.6% 63.3%
3867207 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.62 49.0 4.90e-01 100.0% 82.1%
4269861 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 40.0 4.29e-01 74.7% 76.2%
3675653 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.61 42.0 4.54e-01 85.7% 86.7%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 40.0 3.81e-01 84.6% 57.3%
3579978 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.60 48.0 4.30e-01 85.7% 63.2%
4947612 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.59 42.0 3.62e-01 85.7% 47.1%
3354076 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.59 42.0 3.72e-01 85.7% 51.5%
3501337 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.58 43.0 4.53e-01 86.8% 87.5%
4682138 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 41.0 4.49e-01 83.5% 89.3%
3511505 9.23.1.6 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › DUF7042 0.58 47.0 4.28e-01 86.8% 77.5%
5071546 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.58 41.0 3.61e-01 85.7% 49.6%
3469267 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 41.0 4.05e-01 73.6% 83.2%
3825252 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 40.0 4.11e-01 84.6% 74.4%
3602511 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 34.0 3.77e-01 87.9% 75.7%
3715285 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.57 39.0 3.28e-01 85.7% 41.3%
3257650 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 39.0 4.04e-01 83.5% 76.5%
3642926 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 50.0 4.02e-01 100.0% 75.7%
3553166 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.56 50.0 4.55e-01 100.0% 86.4%
3240676 219.1.1.4 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.56 44.0 3.29e-01 84.6% 42.6%
4002655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 44.0 3.79e-01 83.5% 59.3%
5073807 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.56 41.0 3.63e-01 85.7% 53.8%
3959772 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 33.0 2.78e-01 73.6% 31.5%
3740221 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.54 37.0 3.12e-01 85.7% 40.0%
3401387 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.53 43.0 3.40e-01 85.7% 48.3%
3930954 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.52 32.0 3.35e-01 79.1% 67.1%
3503000 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 40.0 4.13e-01 85.7% 89.4%
3967111 3338.2.1.2 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.51 39.0 3.54e-01 92.3% 60.0%