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LR596902.1__X__X__00058

Bact-Vir

LR596902.1__X__X__00058

Identity

Accession:
LR596902 ↗
Kingdom:
phage

Quality

95.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseburia_phage_Jekyll

TaxID: 2570912

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-57
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.89 61.0 4.20e-01 70.9% 24.1%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.74 50.0 2.95e-01 70.9% 9.4%
4zudA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.69 56.0 3.62e-01 90.9% 41.8%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.69 58.0 3.52e-01 94.5% 29.5%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 49.0 3.57e-01 78.2% 43.2%
2fqmA01 6.10.140.830 Special › Helix non-globular › Helix Hairpins › 0.66 45.0 4.91e-01 70.9% 100.0%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.64 42.0 3.28e-01 81.8% 31.1%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.62 43.0 3.97e-01 72.7% 64.8%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.46e-01 78.2% 82.6%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.60 44.0 3.30e-01 80.0% 46.5%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 3.80e-01 92.7% 46.9%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.60 45.0 4.15e-01 80.0% 63.4%
5ttjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 42.0 2.79e-01 74.5% 36.7%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 42.0 3.41e-01 74.5% 99.0%
5cygB00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.59 42.0 2.68e-01 76.4% 31.4%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 46.0 3.37e-01 83.6% 63.0%
2ph7A01 1.10.3400.10 Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like 0.58 50.0 3.88e-01 98.2% 79.0%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 40.0 3.25e-01 72.7% 99.0%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.55 40.0 2.64e-01 78.2% 37.7%
3nwnA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.55 44.0 2.79e-01 92.7% 37.0%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 38.0 3.17e-01 74.5% 79.8%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 36.0 3.01e-01 70.9% 45.7%
1o54A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 39.0 2.73e-01 80.0% 93.8%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 34.0 2.82e-01 74.5% 33.9%
3ca8A01 1.10.3620.10 Mainly Alpha › Orthogonal Bundle › YdcF fold › YdcF like domain 0.52 35.0 2.86e-01 70.9% 37.7%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.52 43.0 3.01e-01 90.9% 77.3%
1b8pA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.51 42.0 2.97e-01 90.9% 75.6%
2h84A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 37.0 2.78e-01 81.8% 29.7%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3531310 109.4.1.574 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NOC3p 0.88 63.0 4.00e-01 74.5% 18.3%
4022955 3559.1.1.50 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › PF28561 0.87 61.0 4.15e-01 72.7% 83.0%
4026684 192.20.1.7 ↗ alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26729 0.87 60.0 4.74e-01 72.7% 60.0%
3197800 221.13.1.2 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain › RRG1_C 0.82 59.0 4.09e-01 74.5% 41.8%
3921728 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.82 58.0 4.47e-01 74.5% 39.1%
3575090 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.75 64.0 4.51e-01 100.0% 29.9%
3932224 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.74 68.0 4.16e-01 100.0% 17.7%
2033701 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.74 54.0 3.56e-01 80.0% 18.8%
3907411 5001.1.1.111 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.72 62.0 3.83e-01 96.4% 33.6%
5073431 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.71 66.0 3.76e-01 100.0% 13.9%
3723552 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.70 57.0 3.33e-01 89.1% 27.2%
3798829 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.68 63.0 4.05e-01 100.0% 25.3%
3998700 3998.1.1.1 ↗ alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 0.68 54.0 4.79e-01 87.3% 60.0%
4483596 2007.6.1.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI 0.66 47.0 3.01e-01 76.4% 34.5%
4029392 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.65 58.0 3.98e-01 98.2% 63.2%
3920672 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.63 51.0 4.25e-01 89.1% 52.2%
3957469 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.61 53.0 3.82e-01 94.5% 37.3%
3586391 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.60 53.0 3.30e-01 100.0% 69.7%
5077058 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.59 37.0 2.81e-01 78.2% 28.0%
3472076 101.1.1.7 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Ribosomal_S18 0.59 45.0 3.39e-01 81.8% 85.9%
3587620 304.55.1.22 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › MobL 0.58 42.0 2.80e-01 76.4% 59.0%
3686939 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 39.0 3.03e-01 72.7% 79.1%
3296177 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.55 37.0 3.39e-01 72.7% 100.0%
5037162 230.4.1.2 ↗ a+b two layers › T-fold › ApbE-like › ApbE-like › AbpE_bact 0.54 40.0 3.16e-01 83.6% 37.4%
4979123 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.53 37.0 2.60e-01 72.7% 90.6%
3277064 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 35.0 2.54e-01 70.9% 40.0%