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LR596903.1__VUE37414.1__X__00022

Bact-Vir

LR596903.1__VUE37414.1__X__00022

Identity

Accession:
LR596903 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseburia_phage_Shimadzu

TaxID: 2570913

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-141
PDB
Domain cluster: rep: ON615601.1__UTS51982.1__X__00034__D5-121
D2 high residues 182-252
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p3wB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.62 38.0 3.50e-01 83.1% 44.8%
3wkmB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 40.0 3.69e-01 95.8% 55.3%
3v7iA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.56 41.0 3.40e-01 81.7% 63.3%
2avdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 41.0 3.01e-01 81.7% 77.6%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.53 45.0 3.95e-01 98.6% 83.5%
3vwoA02 2.10.70.40 Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase 0.53 34.0 3.81e-01 71.8% 90.2%
3o8lA03 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 3.18e-01 100.0% 93.1%
2jv2A00 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.50 31.0 3.04e-01 73.2% 56.6%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3645661 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.57 40.0 2.52e-01 71.8% 16.2%
3419693 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.57 39.0 2.82e-01 70.4% 30.8%
3809045 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.56 38.0 2.47e-01 70.4% 20.3%
3314246 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.56 39.0 2.57e-01 73.2% 20.1%
3362072 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.55 38.0 2.56e-01 73.2% 20.7%
3377363 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.55 38.0 2.21e-01 73.2% 11.5%
3837438 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.55 40.0 2.78e-01 76.1% 36.5%
3817779 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.54 37.0 2.46e-01 71.8% 19.4%
3465965 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.54 37.0 2.29e-01 71.8% 13.8%
3295463 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.54 38.0 2.21e-01 73.2% 10.2%
3823363 109.4.1.1371 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif, E_motif 0.54 37.0 2.34e-01 73.2% 21.0%
3362870 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.54 37.0 2.60e-01 73.2% 24.0%
3682274 109.4.1.1331 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, E_motif 0.53 37.0 2.42e-01 73.2% 17.9%
3680994 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.53 38.0 2.51e-01 78.9% 35.4%
3831231 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.53 38.0 2.27e-01 76.1% 14.1%
3830604 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.53 37.0 2.42e-01 74.6% 24.0%
3450261 109.4.1.1156 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.53 37.0 3.03e-01 74.6% 62.1%
3648236 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.53 37.0 2.23e-01 73.2% 16.7%
3652283 109.4.1.1335 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif 0.53 39.0 2.45e-01 80.3% 28.5%
3334414 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.52 37.0 2.38e-01 73.2% 16.9%
4868829 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.52 43.0 3.65e-01 94.4% 95.2%
3805784 109.4.1.3484 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, E_motif 0.52 37.0 2.84e-01 76.1% 61.2%
3809404 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.52 38.0 2.30e-01 80.3% 21.7%
3348687 109.4.1.1156 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.51 37.0 3.05e-01 76.1% 43.8%
3672161 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.51 37.0 2.47e-01 76.1% 28.0%
3335423 109.4.1.1993 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif, TPR_24 0.51 36.0 2.12e-01 74.6% 9.0%
3440769 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.51 39.0 2.45e-01 83.1% 31.1%
3428211 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.51 37.0 2.30e-01 77.5% 15.4%
3419108 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.51 38.0 2.36e-01 81.7% 24.9%
3360215 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.50 37.0 2.75e-01 80.3% 31.7%
4084206 377.2.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins 0.50 25.0 3.28e-01 77.5% 87.5%
3520970 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.50 36.0 2.64e-01 76.1% 39.5%
D3 high residues 261-429
PDB
Domain cluster: rep: SRR1747043_scaffold_13_prodigal-single.1__X__X__00026__D72-249
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19789.7 best DUF6273 25.4 1.50e-05 99.4% 91.1%