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LR596903.1__VUE37429.1__X__00029
Bact-VirLR596903.1__VUE37429.1__X__00029
Identity
- Accession:
- LR596903 ↗
- Kingdom:
- phage
Quality
95.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-52
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k7iA01 | 3.30.160.160 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like | 0.67 | 52.0 | 5.34e-01 | 96.1% | 93.8% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.63 | 52.0 | 4.19e-01 | 92.2% | 48.5% |
| 2l2mA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 52.0 | 4.67e-01 | 94.1% | 67.1% |
| 1wh1A01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.62 | 51.0 | 4.33e-01 | 96.1% | 72.2% |
| 5ic7A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 51.0 | 3.14e-01 | 96.1% | 19.4% |
| 2jxwA00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.62 | 39.0 | 3.50e-01 | 100.0% | 42.7% |
| 2dlxA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 50.0 | 4.03e-01 | 98.0% | 86.7% |
| 3kh8A02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 40.0 | 2.97e-01 | 70.6% | 25.6% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.60 | 47.0 | 3.84e-01 | 94.1% | 44.9% |
| 4ikbA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.58 | 46.0 | 3.61e-01 | 96.1% | 67.4% |
| 3u4yA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 47.0 | 2.96e-01 | 98.0% | 21.0% |
| 1ihjA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.57 | 46.0 | 3.93e-01 | 96.1% | 73.4% |
| 6igbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 46.0 | 2.84e-01 | 98.0% | 19.6% |
| 1zxtA01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 41.0 | 3.97e-01 | 100.0% | 68.9% |
| 3ed3B02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 44.0 | 3.40e-01 | 100.0% | 74.5% |
| 3n4eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 45.0 | 3.74e-01 | 100.0% | 50.0% |
| 1x0tA02 | 6.20.50.20 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.55 | 34.0 | 3.52e-01 | 70.6% | 66.7% |
| 1eqtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 40.0 | 3.74e-01 | 100.0% | 62.7% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 45.0 | 4.23e-01 | 100.0% | 80.3% |
| 6n9aB02 | 3.30.420.200 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.55 | 43.0 | 4.05e-01 | 100.0% | 71.0% |
| 2mdiA00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.54 | 38.0 | 3.76e-01 | 94.1% | 69.6% |
| 3dsmA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 43.0 | 2.77e-01 | 100.0% | 97.6% |
| 5n1tA03 | 3.90.760.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain | 0.53 | 36.0 | 3.28e-01 | 70.6% | 76.1% |
| 3s27B01 | 3.10.450.330 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 40.0 | 3.14e-01 | 92.2% | 34.6% |
| 4ifdE00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.52 | 35.0 | 2.26e-01 | 70.6% | 17.6% |
| 1h7sA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 39.0 | 2.71e-01 | 100.0% | 22.3% |
| 3dcxA00 | 2.30.29.50 | Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain | 0.52 | 41.0 | 3.34e-01 | 98.0% | 42.7% |
| 6n3oA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 37.0 | 3.12e-01 | 76.5% | 81.1% |
| 2ivwA01 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 42.0 | 3.71e-01 | 100.0% | 85.0% |
| 3ihpA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.50 | 38.0 | 2.98e-01 | 84.3% | 37.9% |
| 3i9v700 | 3.30.920.80 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 | 0.50 | 40.0 | 3.14e-01 | 96.1% | 75.6% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5075465 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.75 | 60.0 | 5.74e-01 | 96.1% | 75.0% |
| 4188237 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.74 | 59.0 | 5.84e-01 | 96.1% | 81.8% |
| 3284714 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.74 | 59.0 | 5.55e-01 | 96.1% | 71.4% |
| 7726 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.73 | 58.0 | 5.58e-01 | 96.1% | 77.6% |
| 3999576 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.69 | 54.0 | 4.07e-01 | 94.1% | 37.9% |
| 4959885 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.67 | 53.0 | 4.51e-01 | 96.1% | 51.8% |
| 3599967 | 3203.1.1.0 ↗ | a+b two layers › Putative oxidoreductase › Putative oxidoreductase › Putative oxidoreductase | 0.63 | 53.0 | 5.03e-01 | 100.0% | 90.6% |
| 4484723 | 220.1.1.126 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 | 0.63 | 52.0 | 4.31e-01 | 100.0% | 52.9% |
| 3990109 | 2484.1.1.102 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 | 0.63 | 52.0 | 3.98e-01 | 100.0% | 42.2% |
| 4255411 | 220.1.1.126 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 | 0.63 | 52.0 | 4.22e-01 | 100.0% | 50.9% |
| 3586676 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.62 | 45.0 | 4.96e-01 | 88.2% | 100.0% |
| 3597599 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.62 | 46.0 | 3.86e-01 | 96.1% | 44.0% |
| 3504015 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 49.0 | 4.40e-01 | 100.0% | 62.4% |
| 3346241 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.62 | 49.0 | 4.99e-01 | 94.1% | 90.0% |
| 3828070 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.60 | 47.0 | 4.62e-01 | 94.1% | 81.8% |
| 4931724 | 206.1.3.36 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_TupA | 0.59 | 48.0 | 3.11e-01 | 100.0% | 35.3% |
| 4968450 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 43.0 | 4.28e-01 | 82.4% | 90.9% |
| 3801858 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.58 | 48.0 | 4.57e-01 | 92.2% | 78.3% |
| 3408936 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 45.0 | 3.81e-01 | 96.1% | 50.0% |
| 3426675 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.58 | 45.0 | 4.32e-01 | 94.1% | 76.3% |
| 3374672 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.58 | 47.0 | 2.83e-01 | 94.1% | 15.9% |
| 2418904 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.57 | 46.0 | 2.84e-01 | 98.0% | 19.6% |
| 4026653 | 220.1.1.11 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru | 0.56 | 48.0 | 3.83e-01 | 100.0% | 60.0% |
| 3743318 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.56 | 44.0 | 3.04e-01 | 100.0% | 22.9% |
| 3516087 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 46.0 | 4.19e-01 | 100.0% | 66.7% |
| 3929548 | 220.1.1.11 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru | 0.55 | 48.0 | 3.54e-01 | 100.0% | 48.2% |
| 3606532 | 2484.6.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR | 0.55 | 43.0 | 3.74e-01 | 98.0% | 53.3% |
| 5046573 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.55 | 47.0 | 3.38e-01 | 100.0% | 90.6% |
| 3742045 | 220.1.1.11 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru | 0.55 | 44.0 | 3.48e-01 | 100.0% | 40.0% |
| 3175519 | 220.1.1.74 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H | 0.54 | 44.0 | 3.43e-01 | 100.0% | 37.8% |
| 3606500 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.54 | 37.0 | 3.62e-01 | 74.5% | 68.3% |
| 3264726 | 376.1.1.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP_var | 0.54 | 39.0 | 3.16e-01 | 86.3% | 37.3% |
| 5050109 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.54 | 41.0 | 3.68e-01 | 94.1% | 63.5% |
| 3912274 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.54 | 40.0 | 3.75e-01 | 100.0% | 62.9% |
| 3811724 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.54 | 42.0 | 4.10e-01 | 90.2% | 77.6% |
| 4971732 | 1001.1.1.0 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 | 0.53 | 38.0 | 3.80e-01 | 78.4% | 72.7% |
| 3702281 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.53 | 37.0 | 3.68e-01 | 76.5% | 74.5% |
| 3183036 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 42.0 | 3.23e-01 | 100.0% | 36.2% |
| 4304329 | 376.1.1.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP_var | 0.52 | 40.0 | 3.12e-01 | 86.3% | 39.3% |
| 3821886 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.52 | 39.0 | 3.61e-01 | 90.2% | 66.7% |
| 4986952 | 1001.1.1.1 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 | 0.51 | 37.0 | 3.54e-01 | 78.4% | 66.7% |
| 3688496 | 2005.2.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF | 0.51 | 43.0 | 2.71e-01 | 94.1% | 25.1% |