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LR596903.1__VUE37449.1__X__00043

Bact-Vir

LR596903.1__VUE37449.1__X__00043

Identity

Accession:
LR596903 ↗
Kingdom:
phage

Quality

93.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseburia_phage_Shimadzu

TaxID: 2570913

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 66-208
PDB
Domain cluster: rep: SRR1747043_scaffold_13_prodigal-single.1__X__X__00026__D72-249
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19789.7 best DUF6273 48.8 1.00e-12 98.6% 89.9%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2h2tB01 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.63 45.0 4.97e-01 100.0% 89.7%
3bdwA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.62 43.0 4.68e-01 100.0% 83.7%
1afb100 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.60 46.0 4.47e-01 100.0% 72.7%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 28.0 3.60e-01 97.2% 85.2%
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.55 21.0 2.99e-01 93.0% 73.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 24.0 3.30e-01 83.9% 82.4%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 28.0 3.60e-01 96.5% 87.5%
1kf6A04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.54 12.0 2.53e-01 72.7% 62.9%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 22.0 3.07e-01 90.2% 76.8%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.52 29.0 3.66e-01 92.3% 97.4%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 20.0 2.73e-01 98.6% 64.4%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.51 21.0 3.13e-01 82.5% 100.0%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3902773 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.72 48.0 5.34e-01 100.0% 83.5%
4015023 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.71 45.0 4.89e-01 100.0% 75.8%
4054563 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.64 45.0 4.31e-01 100.0% 62.8%
3928126 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.64 47.0 4.93e-01 100.0% 83.1%
4395927 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.60 46.0 4.81e-01 98.6% 86.2%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 23.0 3.31e-01 83.2% 83.9%
4023922 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.55 28.0 2.87e-01 97.2% 49.3%
4945675 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.55 28.0 2.78e-01 97.2% 46.0%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.55 27.0 3.69e-01 90.2% 100.0%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.55 24.0 3.48e-01 94.4% 96.6%
5050433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 20.0 3.20e-01 89.5% 97.8%
4932588 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 27.0 3.65e-01 92.3% 100.0%
5076401 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 28.0 3.62e-01 93.7% 95.7%
4078549 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.54 27.0 2.74e-01 97.2% 46.0%
4027422 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.54 23.0 3.36e-01 84.6% 96.4%
3503388 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.54 28.0 3.15e-01 97.2% 64.5%
3839083 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 27.0 3.54e-01 93.0% 94.3%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 27.0 3.56e-01 93.0% 95.7%
3961546 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 26.0 3.57e-01 91.6% 100.0%
4964421 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 26.0 3.49e-01 90.2% 96.9%
4971470 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.52 28.0 3.54e-01 90.2% 94.7%
4116921 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.52 22.0 3.16e-01 90.9% 88.3%
3278801 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.52 23.0 3.20e-01 93.7% 86.2%
5040230 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 25.0 3.38e-01 89.5% 95.4%
3622389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 22.0 3.14e-01 92.3% 86.2%
3502290 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 22.0 3.22e-01 89.5% 93.3%
4331473 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.51 24.0 3.05e-01 93.7% 75.0%
3915732 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 23.0 2.98e-01 83.9% 72.9%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 27.0 3.45e-01 91.6% 94.7%
3404643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 26.0 3.49e-01 91.6% 100.0%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.50 26.0 3.53e-01 95.8% 100.0%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 24.0 2.84e-01 92.3% 64.2%
3025579 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.50 22.0 3.31e-01 95.8% 98.3%