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LR597635.1__VUF53645.1__X__00030

Bact-Vir

LR597635.1__VUF53645.1__X__00030

Identity

Accession:
LR597635 ↗
Kingdom:
phage

Quality

93.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Radostvirus› Escherichia_phage_ev099

TaxID: 2847061

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-46
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.89 71.0 4.76e-01 100.0% 25.7%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.87 69.0 4.62e-01 100.0% 24.7%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.86 69.0 4.71e-01 100.0% 26.8%
2x6nD00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.85 66.0 4.36e-01 100.0% 21.9%
5cz2C00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.84 66.0 4.55e-01 100.0% 26.3%
7ue1B01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.82 63.0 4.40e-01 100.0% 27.1%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.80 69.0 4.55e-01 100.0% 24.6%
5h80A01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.74 57.0 4.14e-01 100.0% 30.5%
3tw6C01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.74 56.0 3.24e-01 100.0% 8.7%
6xo2A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.73 57.0 4.47e-01 100.0% 39.0%
4hnvB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.73 56.0 3.32e-01 100.0% 11.3%
4bmdA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.67 46.0 3.80e-01 76.1% 38.2%
1jg8A01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.67 52.0 3.33e-01 100.0% 16.7%
2zskA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 53.0 4.13e-01 100.0% 39.1%
1mdbA01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 49.0 3.48e-01 100.0% 26.6%
3lkbA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 51.0 3.62e-01 100.0% 29.9%
3t7iA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.63 45.0 3.35e-01 78.3% 28.7%
4bu0A01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.62 43.0 3.49e-01 78.3% 35.7%
4f2gA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.62 50.0 3.69e-01 100.0% 32.4%
3jveA00 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.61 42.0 3.49e-01 76.1% 36.8%
4p53A01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 47.0 3.40e-01 100.0% 26.6%
4cvhA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.61 49.0 3.22e-01 100.0% 19.3%
2etxA02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.60 42.0 3.49e-01 78.3% 39.4%
3uenA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.60 43.0 3.48e-01 76.1% 38.9%
1gaxA04 3.30.1170.10 Alpha Beta › 2-Layer Sandwich › Valyl-trna Synthetase; Chain: A, domain 4 › 0.59 40.0 3.94e-01 71.7% 66.0%
4impA02 3.40.50.11460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 46.0 3.17e-01 100.0% 28.9%
8azbA01 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.59 48.0 3.20e-01 100.0% 55.6%
1vkyB01 3.40.1780.10 Alpha Beta › 3-Layer(aba) Sandwich › QueA-like › QueA-like 0.58 45.0 3.00e-01 100.0% 19.9%
3olcX02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.58 39.0 3.24e-01 76.1% 34.7%
5dzsB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 44.0 3.37e-01 100.0% 32.6%
3cs3A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 46.0 3.45e-01 100.0% 36.2%
5ereA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 43.0 3.26e-01 100.0% 30.7%
6ecpB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.57 45.0 3.30e-01 95.7% 39.3%
5fbhA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 45.0 3.13e-01 100.0% 26.2%
5nnnA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.55 42.0 3.17e-01 100.0% 29.6%
3ibtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 41.0 2.94e-01 100.0% 24.4%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.54 38.0 2.67e-01 76.1% 22.3%
1fy2A00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.54 41.0 2.86e-01 100.0% 27.3%
3aekA03 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.54 44.0 3.33e-01 97.8% 64.2%
3v4cA02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.53 39.0 2.82e-01 100.0% 22.5%
5tvwA01 3.40.50.11260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 42.0 3.28e-01 97.8% 73.3%
3h5lA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 42.0 3.04e-01 100.0% 35.2%
7kl6A01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 41.0 3.08e-01 100.0% 38.2%
1xs5A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 42.0 3.07e-01 93.5% 92.5%
3g85A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 41.0 3.21e-01 100.0% 42.1%
2nteA02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.51 35.0 2.92e-01 78.3% 66.3%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3986500 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 1.00 95.0 6.31e-01 100.0% 30.7%
3982342 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 1.00 95.0 5.99e-01 100.0% 24.2%
3971375 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.91 76.0 4.92e-01 100.0% 22.3%
3986284 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.90 74.0 4.73e-01 100.0% 21.0%
3982837 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.89 74.0 4.92e-01 100.0% 25.5%
4008012 2484.1.1.202 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 0.89 73.0 4.77e-01 100.0% 22.7%
3480819 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.88 71.0 4.71e-01 100.0% 24.2%
3424158 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 70.0 4.31e-01 100.0% 16.7%
5007658 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.87 71.0 4.99e-01 100.0% 30.4%
3983425 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 72.0 5.11e-01 100.0% 32.3%
3926191 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 69.0 4.36e-01 100.0% 18.2%
3988130 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 71.0 5.07e-01 100.0% 32.8%
3420098 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 71.0 4.49e-01 100.0% 19.1%
3940362 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.87 64.0 3.96e-01 91.3% 15.7%
3927798 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 69.0 4.35e-01 100.0% 18.2%
3783161 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 69.0 4.35e-01 100.0% 18.6%
3933447 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.86 69.0 5.18e-01 100.0% 38.1%
3923752 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.86 57.0 4.43e-01 84.8% 33.7%
3928301 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.86 68.0 4.54e-01 100.0% 23.5%
3588441 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.86 70.0 4.74e-01 100.0% 25.5%
3939641 2484.1.1.104 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_1 0.86 70.0 4.33e-01 100.0% 17.4%
5008723 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.86 69.0 4.59e-01 100.0% 23.4%
3925232 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.85 69.0 4.46e-01 100.0% 21.6%
3923747 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.85 69.0 4.34e-01 100.0% 19.1%
3684741 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.84 68.0 4.34e-01 100.0% 19.5%
3531857 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.84 66.0 4.41e-01 100.0% 22.9%
3520727 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.84 68.0 4.29e-01 100.0% 18.6%
3969957 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.84 69.0 4.49e-01 100.0% 22.1%
3927688 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.84 68.0 4.54e-01 100.0% 24.8%
3515724 2484.1.1.104 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_1 0.84 73.0 4.76e-01 100.0% 24.4%
3930642 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.83 68.0 4.33e-01 100.0% 20.0%
3737623 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.83 67.0 4.24e-01 100.0% 18.6%
None — 0.82 73.0 5.08e-01 100.0% 34.5%
3927185 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.82 66.0 4.20e-01 100.0% 19.5%
3253769 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.82 64.0 4.16e-01 100.0% 20.5%
3936788 2484.1.1.17 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_1 0.81 73.0 4.67e-01 100.0% 24.5%
3260179 2484.1.1.104 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_1 0.81 70.0 5.42e-01 97.8% 46.0%
3210952 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.81 64.0 4.41e-01 100.0% 26.5%
3460608 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.80 64.0 4.07e-01 100.0% 18.6%
3512466 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.80 71.0 5.10e-01 100.0% 36.8%
3984567 2484.1.1.127 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_2 0.80 64.0 4.82e-01 100.0% 36.5%
3248396 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 63.0 4.27e-01 100.0% 24.8%
3933068 2484.1.1.17 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_1 0.79 69.0 4.35e-01 100.0% 21.8%
4946151 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.78 60.0 4.56e-01 100.0% 35.8%
3249604 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.78 62.0 3.96e-01 100.0% 18.6%
3170687 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.78 67.0 4.45e-01 100.0% 25.0%
3926417 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.78 67.0 4.55e-01 100.0% 28.1%
3252840 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.77 61.0 3.85e-01 100.0% 16.7%
3177640 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.77 61.0 3.87e-01 100.0% 18.2%
3932932 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.77 60.0 4.65e-01 100.0% 39.0%
None — 0.75 63.0 4.32e-01 100.0% 26.5%
5084008 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.75 57.0 3.88e-01 100.0% 22.2%
4259031 2484.1.1.219 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 0.74 66.0 4.34e-01 100.0% 25.9%
3789109 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 56.0 3.95e-01 97.8% 26.0%
3931604 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 52.0 3.74e-01 89.1% 25.0%
3653797 2484.1.1.165 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 60.0 3.74e-01 100.0% 16.2%
3462514 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.74 62.0 4.15e-01 100.0% 25.0%
3672736 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.73 61.0 4.16e-01 100.0% 25.7%
3920356 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.72 61.0 4.15e-01 100.0% 25.7%
3942598 2484.1.1.219 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 0.72 63.0 3.99e-01 100.0% 24.3%
3520429 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.72 59.0 4.05e-01 100.0% 25.7%
3283831 9002.1.1.3 ↗ a/b three-layered sandwiches › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 › Biotin_carb_N 0.72 55.0 5.14e-01 100.0% 66.7%
3908469 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 61.0 4.67e-01 100.0% 42.7%
3706297 7577.1.1.0 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases 0.71 56.0 3.44e-01 100.0% 14.5%
3888729 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.69 59.0 4.31e-01 100.0% 36.2%
3337017 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.67 48.0 3.58e-01 80.4% 28.5%
None — 0.67 52.0 3.63e-01 100.0% 24.6%
3937991 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 60.0 4.13e-01 100.0% 32.1%
4990341 7542.1.1.7 ↗ a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › PF28406 0.67 54.0 4.15e-01 100.0% 37.8%
3394330 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.65 49.0 3.62e-01 100.0% 28.9%
5066150 7584.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.63 49.0 3.35e-01 100.0% 22.1%
4968883 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.63 50.0 4.65e-01 100.0% 81.5%
4939468 7542.1.1.7 ↗ a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › PF28406 0.63 49.0 3.74e-01 100.0% 35.0%
4959686 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.62 50.0 3.86e-01 100.0% 40.8%
3731446 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.61 52.0 3.52e-01 100.0% 26.5%
4960789 7590.1.1.0 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.61 51.0 3.57e-01 100.0% 27.9%
3484128 7568.1.1.0 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.60 42.0 3.24e-01 78.3% 30.0%
4986644 7590.1.1.1 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Peptidase_M29 0.60 49.0 3.53e-01 100.0% 29.7%
5046178 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.59 47.0 3.60e-01 100.0% 39.2%
3494502 7568.1.1.1 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.59 42.0 3.31e-01 78.3% 33.3%
4972800 2006.1.3.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim 0.59 48.0 3.33e-01 100.0% 31.7%
4446035 7523.1.1.3 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.59 50.0 3.32e-01 100.0% 50.7%
4962923 7590.1.1.1 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Peptidase_M29 0.57 46.0 3.34e-01 100.0% 29.4%
143537 7568.1.1.4 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.51 35.0 2.98e-01 78.3% 36.6%
D2 high residues 52-115
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13683.13 best rve_3 60.2 1.80e-16 85.9% 82.1%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.80 68.0 5.08e-01 93.8% 39.6%
4hstB03 1.10.1400.10 Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region 0.64 46.0 3.65e-01 76.6% 67.4%
4wojA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 42.0 3.03e-01 87.5% 25.0%
7zclA01 1.10.489.10 Mainly Alpha › Orthogonal Bundle › Chloroperoxidase › Chloroperoxidase-like 0.56 44.0 3.16e-01 87.5% 40.3%
4b3hA03 1.10.1040.50 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › 0.56 42.0 2.98e-01 82.8% 84.9%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 37.0 3.37e-01 73.4% 90.4%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 45.0 3.49e-01 95.3% 75.8%
2opeA00 3.30.540.20 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › 0.53 45.0 3.72e-01 96.9% 65.8%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3982342 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.98 94.0 6.39e-01 100.0% 33.7%
4957414 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.95 87.0 5.95e-01 95.3% 33.5%
3970062 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.95 89.0 6.16e-01 100.0% 34.6%
4336164 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.94 88.0 6.15e-01 100.0% 35.6%
4928272 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.94 85.0 6.16e-01 95.3% 39.9%
3588051 2484.1.1.202 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 0.93 87.0 6.08e-01 100.0% 35.6%
3985723 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.93 88.0 5.90e-01 100.0% 31.7%
3982837 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.92 82.0 5.83e-01 93.8% 37.0%
3971375 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.91 86.0 5.93e-01 100.0% 34.6%
3588441 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.91 83.0 5.92e-01 96.9% 38.8%
4008012 2484.1.1.202 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 0.91 81.0 5.64e-01 95.3% 33.5%
3985938 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.90 84.0 5.76e-01 100.0% 33.3%
3588285 2484.1.1.202 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 0.90 84.0 5.71e-01 100.0% 32.0%
3969957 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.89 76.0 5.25e-01 92.2% 30.5%
3986284 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.89 82.0 5.67e-01 100.0% 32.8%
3519322 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.89 82.0 5.61e-01 98.4% 32.8%
3283910 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.87 78.0 5.75e-01 96.9% 40.6%
4099374 2484.1.1.202 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 0.87 81.0 5.73e-01 100.0% 36.6%
3947062 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.87 79.0 5.44e-01 100.0% 32.3%
5059876 2484.1.1.117 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 0.85 76.0 5.41e-01 100.0% 35.4%
4010375 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.84 72.0 5.08e-01 93.8% 32.4%
5028784 2484.1.1.117 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 0.82 72.0 4.77e-01 95.3% 27.1%
5029192 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.82 72.0 5.09e-01 95.3% 33.9%
3480819 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.81 68.0 4.99e-01 95.3% 35.8%
3963648 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.80 72.0 4.88e-01 100.0% 28.9%
3952641 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.79 71.0 4.98e-01 100.0% 89.2%
3590481 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.73 64.0 4.46e-01 100.0% 31.0%
3557533 148.1.3.17 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.69 51.0 4.53e-01 93.8% 55.6%
3956257 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.69 61.0 4.29e-01 100.0% 33.2%
4575809 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.57 48.0 3.12e-01 93.8% 54.2%
3808893 108.1.1.35 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_13 0.57 43.0 3.94e-01 98.4% 61.1%
4026610 4250.1.1.1 ↗ alpha bundles › Duffy-binding-like domain, N-terminal subdomain › Duffy-binding-like domain, N-terminal subdomain › Duffy-binding-like domain, N-terminal subdomain › Duffy_binding 0.57 49.0 3.19e-01 100.0% 35.0%