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LR597642.1__VUF53393.1__X__00021

Bact-Vir

LR597642.1__VUF53393.1__X__00021

Identity

Accession:
LR597642 ↗
Kingdom:
phage

Quality

86.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-93
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ptqA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.75 56.0 3.64e-01 78.3% 39.6%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 53.0 5.11e-01 76.8% 97.5%
4q20A01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.72 49.0 4.61e-01 73.9% 58.5%
2wl8C00 1.20.120.900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain 0.72 51.0 4.33e-01 76.8% 46.8%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.72 50.0 4.70e-01 78.3% 58.6%
3ay5A01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.72 57.0 4.56e-01 85.5% 54.1%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.71 50.0 4.41e-01 73.9% 64.1%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.71 51.0 4.72e-01 76.8% 71.1%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 51.0 3.52e-01 76.8% 39.8%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.71 51.0 4.95e-01 76.8% 96.1%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.70 53.0 5.11e-01 84.1% 72.7%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.69 55.0 5.05e-01 97.1% 65.2%
1k3kA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.69 56.0 4.37e-01 98.6% 41.8%
6tkyA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.69 54.0 4.51e-01 85.5% 59.8%
2jx0A00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.69 53.0 4.33e-01 84.1% 48.1%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.69 57.0 4.98e-01 89.9% 76.5%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.69 61.0 3.74e-01 100.0% 54.5%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.69 60.0 4.83e-01 100.0% 53.2%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 60.0 3.93e-01 100.0% 45.0%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.68 46.0 3.82e-01 71.0% 38.1%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.67 60.0 4.68e-01 98.6% 61.5%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.67 47.0 4.46e-01 73.9% 85.4%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 57.0 5.32e-01 94.2% 85.1%
4nswB01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.67 48.0 3.27e-01 76.8% 21.1%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.67 54.0 4.73e-01 89.9% 73.6%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 49.0 4.34e-01 78.3% 55.0%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 48.0 4.98e-01 76.8% 84.1%
1tj7A02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.67 47.0 3.15e-01 75.4% 40.9%
4a17U01 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 52.0 5.08e-01 95.7% 80.5%
3kr9A02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 52.0 5.43e-01 89.9% 100.0%
2qe7G01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.65 48.0 4.37e-01 81.2% 58.8%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.65 51.0 4.87e-01 89.9% 72.9%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.65 52.0 4.46e-01 89.9% 73.3%
1zvzA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.63 48.0 4.04e-01 84.1% 53.2%
2e9xD01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 51.0 4.10e-01 89.9% 45.3%
6al9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.63 53.0 4.95e-01 100.0% 74.7%
2h9dD00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.63 55.0 4.88e-01 100.0% 73.0%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.63 45.0 3.61e-01 76.8% 39.2%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.61 45.0 4.41e-01 81.2% 91.0%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.60 50.0 5.09e-01 100.0% 100.0%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.60 52.0 4.93e-01 100.0% 84.3%
5figA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 49.0 4.37e-01 91.3% 96.0%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.59 50.0 4.68e-01 100.0% 95.6%
1zymA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.59 52.0 4.29e-01 100.0% 70.6%
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 46.0 4.07e-01 85.5% 73.8%
2hroA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.59 51.0 4.22e-01 100.0% 57.0%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.56 47.0 3.74e-01 97.1% 76.6%
1q2lA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 49.0 3.44e-01 100.0% 59.3%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.54 41.0 2.89e-01 81.2% 67.9%
1y56B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 41.0 3.02e-01 89.9% 60.1%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3916497 632.8.1.17 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Rab_eff_C 0.79 57.0 4.58e-01 76.8% 41.6%
3962893 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.76 54.0 4.79e-01 73.9% 57.9%
3664164 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.76 56.0 4.45e-01 76.8% 41.5%
3167298 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.74 52.0 4.47e-01 72.5% 72.4%
3315495 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.74 51.0 4.79e-01 81.2% 58.8%
3573035 109.4.1.3370 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PL48 0.74 53.0 4.25e-01 76.8% 60.0%
4612826 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.73 51.0 4.85e-01 72.5% 83.7%
3780051 3602.1.1.0 alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain 0.73 53.0 5.66e-01 76.8% 88.3%
3491418 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.72 50.0 4.92e-01 76.8% 68.0%
5044800 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.71 52.0 4.96e-01 76.8% 67.5%
3991205 3777.1.1.1 alpha bundles › Prolyl 4-hydroxylase alpha subunit dimerization domain › Prolyl 4-hydroxylase alpha subunit dimerization domain › Prolyl 4-hydroxylase alpha subunit dimerization domain › P4Ha_N 0.71 49.0 4.41e-01 72.5% 66.3%
3487862 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.71 50.0 3.45e-01 78.3% 21.7%
3590073 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.70 63.0 5.88e-01 100.0% 83.5%
3447988 603.1.1.102 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF3537 0.70 56.0 4.11e-01 89.9% 55.9%
3223368 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.70 59.0 4.50e-01 92.8% 76.1%
3990885 164.1.1.0 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.70 64.0 5.77e-01 98.6% 80.0%
5064482 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.69 51.0 3.88e-01 78.3% 32.7%
3902100 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.69 49.0 4.63e-01 76.8% 61.2%
4499545 604.9.1.20 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › TMD_POM152 0.69 47.0 4.18e-01 72.5% 49.0%
3556027 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.69 49.0 4.61e-01 76.8% 61.2%
2323907 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.68 49.0 3.41e-01 76.8% 22.9%
3855461 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.68 49.0 4.62e-01 76.8% 64.7%
3239865 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.68 57.0 4.59e-01 94.2% 89.6%
5045531 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.67 54.0 5.11e-01 88.4% 75.3%
3940580 604.6.1.14 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › RasGAP_C 0.67 55.0 4.66e-01 89.9% 67.8%
3423387 611.9.1.0 alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain 0.67 47.0 4.04e-01 73.9% 90.9%
3264174 622.4.1.58 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › PF26756 0.66 53.0 5.14e-01 89.9% 86.3%
4025636 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.66 49.0 3.77e-01 81.2% 34.8%
5081636 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.66 55.0 4.15e-01 100.0% 36.1%
3529707 4.1.1.453 beta barrels › SH3 › SH3 › SH3 › HR1_TOCA 0.65 47.0 4.32e-01 78.3% 85.3%
4075864 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.65 44.0 4.71e-01 81.2% 87.3%
3607831 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.65 53.0 4.70e-01 89.9% 72.0%
3192128 604.12.1.71 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › TMD_POM152 0.64 46.0 4.03e-01 76.8% 64.8%
3258505 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.63 48.0 3.79e-01 89.9% 37.4%
5029393 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.63 55.0 5.09e-01 100.0% 79.8%
4929003 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.63 55.0 5.09e-01 100.0% 77.8%
3628093 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.63 46.0 4.04e-01 78.3% 64.8%
3209404 604.1.1.129 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF6604 0.62 55.0 4.87e-01 100.0% 72.0%
3578418 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 52.0 4.18e-01 98.6% 91.1%
3947660 607.1.1.1 alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › PEP-utilisers_N 0.59 51.0 4.26e-01 100.0% 72.0%
4530307 607.1.1.1 alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › PEP-utilisers_N 0.58 51.0 4.26e-01 100.0% 58.4%
3757019 5001.1.1.26 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Ocular_alb 0.56 46.0 3.03e-01 92.8% 85.2%
4945740 1079.1.1.0 alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA 0.55 45.0 3.46e-01 100.0% 41.1%
5054485 5055.1.1.0 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.55 45.0 4.37e-01 92.8% 80.0%
None 0.52 44.0 2.90e-01 100.0% 30.0%