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LR597645.1__VUF54120.1__X__00065

Bact-Vir

LR597645.1__VUF54120.1__X__00065

Identity

Accession:
LR597645 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Escherichia_phage_Fraca

TaxID: 2562643

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-142
PDB
Domain cluster: rep: MK359359.1__QAY13973.1__SEA_COLT_25__00025__D33-144
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01844.30 best HNH 22.8 1.10e-04 51.2% 95.7%
D2 high residues 153-215
PDB
Domain cluster: rep: NC_002362.1__NP_059538.1__VfO3K6p08__00008__D232-287
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 41.0 3.71e-01 95.2% 48.8%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 41.0 4.10e-01 96.8% 63.6%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 42.0 4.05e-01 95.2% 66.2%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 41.0 3.80e-01 95.2% 59.3%
3g7dA04 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 44.0 3.88e-01 98.4% 58.2%
3kjxD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 35.0 3.62e-01 90.5% 68.9%
2uvfB02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.53 43.0 2.63e-01 92.1% 30.8%
3l6gA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 43.0 3.33e-01 93.7% 91.3%
2hivA01 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.52 46.0 3.19e-01 100.0% 37.6%
1cukA03 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.51 35.0 3.86e-01 71.4% 100.0%
1flcB00 3.90.20.10 Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › 0.51 41.0 3.14e-01 92.1% 77.8%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3865154 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.68 47.0 3.65e-01 98.4% 34.1%
4973623 4095.1.1.0 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain 0.66 46.0 3.14e-01 73.0% 88.6%
3808441 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.65 46.0 3.53e-01 98.4% 32.4%
4982623 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.63 42.0 3.96e-01 98.4% 53.8%
5040762 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.62 43.0 3.64e-01 74.6% 43.8%
4514016 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.61 40.0 3.49e-01 88.9% 43.0%
5054533 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.60 43.0 4.34e-01 95.2% 73.8%
4034522 857.1.1.2 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › PVL_ORF50 0.60 39.0 3.49e-01 73.0% 44.2%
3980766 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.57 41.0 3.40e-01 76.2% 57.3%
4189730 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.54 48.0 3.32e-01 100.0% 40.5%
5046138 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.54 46.0 3.24e-01 100.0% 40.0%
3969915 101.15.1.12 ↗ alpha arrays › HTH › LysM domain › LysM domain › PF30403 0.53 42.0 4.10e-01 92.1% 78.6%
3730709 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.53 47.0 3.10e-01 100.0% 37.8%
3221597 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.53 46.0 3.26e-01 98.4% 41.5%
3276947 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.52 46.0 3.03e-01 100.0% 31.6%