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LR597649.1__VUF53814.1__X__00042
Bact-VirLR597649.1__VUF53814.1__X__00042
Identity
- Accession:
- LR597649 ↗
- Kingdom:
- phage
Quality
74.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Peduoviridae›
Quadragintavirus›
Escherichia_phage_ESSI2_ev015
TaxID: 2695850
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-89
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3doaA03 | 3.40.970.40 | Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › fibrinogen binding protein from staphylococcus aureus domain like | 0.70 | 27.0 | 3.76e-01 | 100.0% | 69.8% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.58 | 33.0 | 4.05e-01 | 100.0% | 94.0% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 39.0 | 3.54e-01 | 90.6% | 51.3% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.56 | 38.0 | 3.72e-01 | 100.0% | 65.2% |
| 1i1iP02 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.54 | 34.0 | 2.89e-01 | 77.6% | 36.4% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.54 | 43.0 | 4.43e-01 | 89.4% | 100.0% |
| 3ihpA03 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 42.0 | 2.85e-01 | 85.9% | 93.4% |
| 1ekzA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 33.0 | 3.51e-01 | 78.8% | 69.7% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 48.0 | 4.73e-01 | 100.0% | 98.9% |
| 3w1hA01 | 3.90.1150.110 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.53 | 42.0 | 3.32e-01 | 87.1% | 52.4% |
| 3g14B00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 44.0 | 3.49e-01 | 91.8% | 60.7% |
| 6sjqA00 | 3.10.20.650 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 43.0 | 3.97e-01 | 94.1% | 81.7% |
| 1wjwA01 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.52 | 39.0 | 3.93e-01 | 80.0% | 83.5% |
| 1b7yB05 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 44.0 | 3.48e-01 | 96.5% | 57.1% |
| 1j5wB01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 45.0 | 3.53e-01 | 100.0% | 49.3% |
| 7eehA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.52 | 42.0 | 3.15e-01 | 92.9% | 91.2% |
| 5uayA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.52 | 40.0 | 4.10e-01 | 91.8% | 87.8% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.52 | 32.0 | 3.68e-01 | 100.0% | 94.5% |
| 2qyzA01 | 3.30.1490.160 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ctc02137 like domains | 0.52 | 30.0 | 3.70e-01 | 100.0% | 94.3% |
| 3d3lA02 | 3.10.450.60 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 3.76e-01 | 75.3% | 83.7% |
| 1yb2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 38.0 | 2.86e-01 | 82.4% | 66.5% |
| 6r8gB02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.51 | 37.0 | 3.09e-01 | 81.2% | 52.4% |
| 3d3sA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 42.0 | 3.47e-01 | 92.9% | 85.5% |
| 2n8qA01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.50 | 35.0 | 3.46e-01 | 74.1% | 84.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3969578 | 3268.1.1.0 ↗ | a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase | 0.83 | 37.0 | 4.58e-01 | 100.0% | 67.3% |
| 3608365 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.60 | 41.0 | 2.41e-01 | 70.6% | 13.0% |
| 3602534 | 375.1.1.199 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MJ0401 | 0.59 | 29.0 | 3.89e-01 | 96.5% | 97.5% |
| 3632874 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.58 | 39.0 | 3.15e-01 | 70.6% | 89.7% |
| 5056191 | 7515.1.1.6 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest | 0.56 | 44.0 | 2.95e-01 | 85.9% | 83.5% |
| 3444419 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 38.0 | 3.63e-01 | 74.1% | 65.0% |
| 3477564 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 46.0 | 2.98e-01 | 100.0% | 89.4% |
| 3433661 | 375.1.1.51 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 | 0.52 | 26.0 | 3.35e-01 | 98.8% | 97.5% |
| 3404684 | 10.12.1.84 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom | 0.52 | 39.0 | 2.98e-01 | 81.2% | 65.2% |
| 3997362 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 42.0 | 3.20e-01 | 90.6% | 41.4% |
| 5025349 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.52 | 41.0 | 2.84e-01 | 90.6% | 28.1% |
| 4567075 | 10.12.1.84 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom | 0.52 | 39.0 | 2.73e-01 | 81.2% | 46.0% |
| 3583232 | 864.1.1.3 ↗ | a+b two layers › DLC › DLC › DLC › Ground-like | 0.51 | 37.0 | 3.88e-01 | 96.5% | 86.7% |
| 4973153 | 304.103.1.5 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › TM1586_NiRdase | 0.51 | 42.0 | 4.08e-01 | 90.6% | 80.0% |
| 3484483 | 864.1.1.1 ↗ | a+b two layers › DLC › DLC › DLC › Dynein_light | 0.51 | 41.0 | 3.94e-01 | 89.4% | 94.0% |
| 4217743 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.51 | 40.0 | 2.64e-01 | 87.1% | 35.9% |