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LR597656.1__VUF55099.1__X__00059
Bact-VirLR597656.1__VUF55099.1__X__00059
Identity
- Accession:
- LR597656 ↗
- Kingdom:
- phage
Quality
86.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Drexlerviridae›
Tlsvirus›
Escherichia_phage_Stevie_ev116
TaxID: 2695840
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-55
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ojmX02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.78 | 61.0 | 4.80e-01 | 87.8% | 77.1% |
| 4ja3A02 | 1.10.286.90 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › MFS transporter, transmembrane helix TM10b | 0.77 | 53.0 | 5.58e-01 | 81.6% | 83.7% |
| 2d2sA01 | 1.20.58.1210 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain | 0.68 | 52.0 | 4.02e-01 | 89.8% | 36.2% |
| 3b34A05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.68 | 57.0 | 3.53e-01 | 100.0% | 22.2% |
| 5dikA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.67 | 56.0 | 4.40e-01 | 100.0% | 56.2% |
| 5cwhA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.67 | 56.0 | 4.05e-01 | 100.0% | 41.0% |
| 3c5wA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.66 | 54.0 | 3.59e-01 | 100.0% | 29.4% |
| 3mgkB00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.64 | 56.0 | 3.71e-01 | 100.0% | 94.0% |
| 4nrhB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 54.0 | 3.78e-01 | 100.0% | 33.5% |
| 4xllA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.63 | 52.0 | 3.54e-01 | 93.9% | 99.5% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 50.0 | 4.44e-01 | 98.0% | 59.0% |
| 4houB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 52.0 | 3.40e-01 | 100.0% | 24.8% |
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.62 | 46.0 | 3.24e-01 | 85.7% | 90.4% |
| 3mvuA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.62 | 46.0 | 3.06e-01 | 85.7% | 36.2% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.61 | 48.0 | 3.67e-01 | 87.8% | 46.3% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.60 | 46.0 | 3.45e-01 | 85.7% | 31.9% |
| 2k85A00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.60 | 46.0 | 4.28e-01 | 87.8% | 83.1% |
| 2dg8D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 50.0 | 3.51e-01 | 98.0% | 65.3% |
| 3dfuA02 | 1.10.1040.40 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › | 0.60 | 46.0 | 3.78e-01 | 89.8% | 46.5% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 45.0 | 4.00e-01 | 95.9% | 70.6% |
| 5gizA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.59 | 43.0 | 3.24e-01 | 81.6% | 88.4% |
| 2af0A02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.56 | 46.0 | 4.03e-01 | 98.0% | 68.8% |
| 3u4qB04 | 6.10.140.1030 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 47.0 | 4.30e-01 | 100.0% | 85.5% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 45.0 | 4.24e-01 | 93.9% | 85.5% |
| 4yf2A00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.53 | 42.0 | 3.20e-01 | 91.8% | 49.2% |
| 4m7oA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.52 | 45.0 | 3.37e-01 | 98.0% | 49.6% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957963 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.75 | 57.0 | 4.56e-01 | 83.7% | 44.0% |
| 3990693 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.75 | 53.0 | 5.78e-01 | 81.6% | 90.0% |
| 3326531 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.75 | 58.0 | 6.02e-01 | 89.8% | 95.6% |
| 3989443 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.75 | 57.0 | 5.45e-01 | 85.7% | 82.8% |
| 4641265 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.75 | 56.0 | 4.44e-01 | 83.7% | 41.9% |
| 4177727 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.73 | 58.0 | 4.46e-01 | 87.8% | 39.1% |
| 3992031 | 548.1.1.0 ↗ | alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain | 0.66 | 52.0 | 5.24e-01 | 91.8% | 88.0% |
| 138979 | 2007.1.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DJ-1_PfpI | 0.64 | 55.0 | 3.70e-01 | 100.0% | 95.0% |
| 5058753 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.64 | 46.0 | 3.27e-01 | 100.0% | 22.8% |
| 3889216 | 509.1.1.3 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › USH1C_N | 0.63 | 50.0 | 4.59e-01 | 100.0% | 74.7% |
| 3970264 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.63 | 53.0 | 3.56e-01 | 98.0% | 90.0% |
| 3008274 | 3796.1.1.1 ↗ | alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Isd_H_B_linker | 0.61 | 50.0 | 5.12e-01 | 98.0% | 97.9% |
| 5029322 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.60 | 49.0 | 3.38e-01 | 91.8% | 62.2% |
| 3873688 | 206.1.1.7 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase | 0.60 | 47.0 | 2.93e-01 | 100.0% | 38.7% |
| 4979616 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.60 | 49.0 | 3.32e-01 | 91.8% | 60.6% |
| 5070046 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.59 | 48.0 | 3.29e-01 | 91.8% | 58.4% |
| 5055734 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.59 | 48.0 | 3.26e-01 | 91.8% | 58.9% |
| 3602889 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.58 | 46.0 | 3.09e-01 | 87.8% | 47.2% |
| 3252087 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.58 | 44.0 | 4.08e-01 | 98.0% | 64.6% |
| 3972090 | 101.1.2.668 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28010 | 0.58 | 45.0 | 4.01e-01 | 95.9% | 71.8% |
| 4989422 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.58 | 47.0 | 3.18e-01 | 91.8% | 28.6% |
| 4165355 | 2004.1.1.494 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N, PF27467 | 0.58 | 49.0 | 2.79e-01 | 100.0% | 9.4% |
| 4948692 | 206.1.3.120 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › LysX_preATP_grasp | 0.57 | 46.0 | 2.73e-01 | 87.8% | 50.6% |
| 3171048 | 603.1.1.205 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29691 | 0.57 | 49.0 | 3.76e-01 | 100.0% | 90.8% |
| 4953264 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.55 | 43.0 | 3.70e-01 | 91.8% | 61.2% |
| 4009124 | 639.2.1.5 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 | 0.55 | 43.0 | 4.06e-01 | 87.8% | 83.3% |
| 3943035 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.54 | 43.0 | 3.98e-01 | 93.9% | 78.5% |
| 4313221 | 2004.1.1.552 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C | 0.53 | 44.0 | 2.57e-01 | 100.0% | 42.3% |