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LR743523.1__CAA2366765.1__X__00018
Bact-VirLR743523.1__CAA2366765.1__X__00018
Identity
- Accession:
- LR743523 ↗
- Kingdom:
- phage
Quality
58.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 26-107
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18834.7 best | LPD22 | 90.3 | 1.10e-25 | 100.0% | 82.5% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t72A02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.70 | 35.0 | 3.33e-01 | 79.3% | 40.8% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.67 | 32.0 | 3.09e-01 | 82.9% | 41.1% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 33.0 | 3.28e-01 | 80.5% | 44.4% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 32.0 | 3.40e-01 | 76.8% | 57.5% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.58 | 34.0 | 3.56e-01 | 73.2% | 61.5% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.55 | 34.0 | 3.33e-01 | 81.7% | 57.5% |
| 3vaxA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.55 | 46.0 | 3.20e-01 | 91.5% | 88.2% |
| 2i0mA02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.54 | 41.0 | 3.79e-01 | 79.3% | 99.0% |
| 2ot4A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 45.0 | 4.12e-01 | 96.3% | 88.8% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.51 | 38.0 | 3.69e-01 | 81.7% | 72.9% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.50 | 36.0 | 3.21e-01 | 74.4% | 66.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3904072 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.59 | 31.0 | 2.79e-01 | 79.3% | 33.9% |
| 4024271 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.58 | 43.0 | 3.66e-01 | 78.0% | 85.9% |
| 4028391 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.57 | 42.0 | 3.64e-01 | 80.5% | 95.6% |
| 3705785 | 3050.1.1.30 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › TMEM254 | 0.57 | 43.0 | 4.12e-01 | 96.3% | 70.5% |
| 4029935 | 3393.1.1.0 ↗ | extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV | 0.53 | 30.0 | 3.13e-01 | 87.8% | 60.0% |
| 3298264 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 37.0 | 2.89e-01 | 74.4% | 45.6% |
| 3483114 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.52 | 41.0 | 4.08e-01 | 89.0% | 82.4% |
D2
medium
residues 192-281
D3
medium
residues 282-347
D4
medium
residues 472-553
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k59A02 | 3.30.70.2250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif | 0.57 | 43.0 | 4.63e-01 | 85.4% | 98.5% |
| 2cw7A02 | 1.10.10.1010 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV | 0.57 | 50.0 | 4.18e-01 | 100.0% | 86.3% |
| 2zyzB01 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.57 | 41.0 | 4.07e-01 | 87.8% | 72.7% |
| 2xliA01 | 3.30.70.2540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 | 0.56 | 43.0 | 3.60e-01 | 85.4% | 54.5% |
| 1nh8A03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 38.0 | 4.11e-01 | 86.6% | 98.5% |
| 2g47A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 40.0 | 3.02e-01 | 90.2% | 78.7% |
| 2wz1B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.51 | 43.0 | 3.40e-01 | 100.0% | 95.4% |
| 4ushA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 3.77e-01 | 89.0% | 79.6% |
| 1f0xA01 | 3.30.70.610 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › D-lactate dehydrogenase, cap domain, subdomain 1 | 0.50 | 39.0 | 3.77e-01 | 89.0% | 87.0% |
| 2yweA04 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 41.0 | 3.69e-01 | 90.2% | 93.0% |
| 1s48A04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.50 | 42.0 | 3.88e-01 | 95.1% | 77.5% |
| 1jihA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.50 | 43.0 | 3.32e-01 | 100.0% | 81.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4932197 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.60 | 43.0 | 4.52e-01 | 85.4% | 88.6% |
| 5047839 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.57 | 42.0 | 4.27e-01 | 82.9% | 81.2% |
| 2754812 | 304.35.1.2 ↗ | a+b two layers › Alpha-beta plaits › Methyl-coenzyme M reductase subunits › Methyl-coenzyme M reductase subunits › MCR_alpha_N | 0.56 | 46.0 | 3.25e-01 | 92.7% | 59.0% |
| 3968783 | 304.114.1.1 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › DNApolII_insertion | 0.56 | 41.0 | 4.40e-01 | 85.4% | 94.3% |
| 3413500 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.55 | 42.0 | 3.04e-01 | 86.6% | 39.6% |
| 3226535 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.55 | 42.0 | 3.04e-01 | 87.8% | 41.1% |
| 4938102 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.54 | 39.0 | 4.13e-01 | 85.4% | 91.4% |
| 1830960 | 1071.1.1.1 ↗ | alpha complex topology › CRISPR-associated endonuclease Cpf1 second helical domain › CRISPR-associated endonuclease Cpf1 second helical domain › CRISPR-associated endonuclease Cpf1 second helical domain › cas_Cpf1_2nd | 0.54 | 47.0 | 3.59e-01 | 100.0% | 71.0% |
| 3479414 | 304.20.1.2 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 | 0.54 | 44.0 | 3.60e-01 | 90.2% | 96.2% |
| 5016146 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.53 | 40.0 | 4.15e-01 | 82.9% | 89.3% |
| 5026455 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.52 | 40.0 | 3.84e-01 | 82.9% | 74.7% |
| 4321513 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.51 | 42.0 | 3.83e-01 | 90.2% | 92.7% |
| 3599309 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.51 | 45.0 | 3.26e-01 | 100.0% | 71.2% |
| 3470146 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.51 | 44.0 | 3.45e-01 | 100.0% | 93.5% |
| 4374676 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.50 | 41.0 | 3.79e-01 | 90.2% | 87.6% |
D5
medium
residues 556-619