Back to structures

LR743530.1__CAA2409777.1__X__00018

Bact-Vir

LR743530.1__CAA2409777.1__X__00018

Identity

Accession:
LR743530 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-34
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.76 63.0 4.15e-01 100.0% 28.6%
2iecD00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.72 54.0 3.71e-01 84.8% 27.4%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.66 55.0 3.82e-01 100.0% 47.9%
4mb7A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 45.0 3.02e-01 75.8% 17.7%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 55.0 3.21e-01 100.0% 19.1%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 47.0 4.06e-01 100.0% 50.0%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 49.0 3.71e-01 97.0% 74.5%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.63 45.0 3.23e-01 84.8% 24.5%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 50.0 4.41e-01 100.0% 69.1%
2r44A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 42.0 2.73e-01 75.8% 13.8%
4bs9A04 3.30.40.250 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.61 44.0 3.53e-01 97.0% 86.7%
8gj8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 46.0 2.80e-01 90.9% 14.4%
2jx8A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 43.0 4.03e-01 81.8% 57.4%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 45.0 3.75e-01 100.0% 61.3%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 45.0 2.60e-01 100.0% 8.0%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 46.0 2.64e-01 100.0% 8.0%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 44.0 2.72e-01 100.0% 11.8%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 2.73e-01 100.0% 13.0%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.56 42.0 2.95e-01 97.0% 58.0%
6eudA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 2.83e-01 93.9% 78.2%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 38.0 2.75e-01 81.8% 23.5%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.56 46.0 3.33e-01 100.0% 32.7%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.61e-01 93.9% 12.0%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 40.0 2.80e-01 93.9% 31.8%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 2.71e-01 100.0% 12.9%
1edzA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 39.0 2.70e-01 84.8% 19.2%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.54 40.0 3.31e-01 100.0% 98.8%
3fetA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 42.0 2.87e-01 100.0% 20.0%
3obaA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 39.0 2.37e-01 90.9% 81.4%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.54 43.0 2.91e-01 100.0% 81.5%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 39.0 3.72e-01 78.8% 59.5%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.53 39.0 3.09e-01 100.0% 89.0%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 41.0 2.73e-01 100.0% 19.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.24e-01 100.0% 43.4%
2kjxA01 3.30.720.220 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 39.0 3.62e-01 97.0% 83.0%
2z4hA02 2.40.50.540 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain 0.53 37.0 3.06e-01 84.8% 86.0%
1jhnA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 40.0 2.53e-01 100.0% 33.6%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.52 36.0 2.82e-01 75.8% 24.4%
3zf8A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 39.0 2.36e-01 81.8% 14.9%
5aykA07 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 40.0 2.95e-01 100.0% 73.0%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.51 37.0 3.54e-01 84.8% 63.6%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.51 37.0 3.49e-01 84.8% 60.0%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 42.0 3.49e-01 100.0% 66.7%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3519410 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.73 54.0 5.22e-01 84.8% 71.8%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.72 59.0 4.22e-01 100.0% 30.9%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.72 60.0 4.58e-01 100.0% 41.2%
3926370 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.71 54.0 3.15e-01 87.9% 31.2%
3504386 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.70 53.0 4.35e-01 90.9% 54.3%
3931457 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.70 51.0 3.01e-01 84.8% 31.2%
3933306 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.68 51.0 3.08e-01 87.9% 38.3%
4227222 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.68 54.0 4.43e-01 100.0% 50.0%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 53.0 3.96e-01 100.0% 35.0%
3923267 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.65 48.0 2.86e-01 87.9% 32.2%
3480321 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 51.0 4.11e-01 100.0% 74.0%
4481026 4.1.1.407 beta barrels › SH3 › SH3 › SH3 › PF29661 0.64 52.0 4.46e-01 100.0% 55.0%
3924415 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.64 46.0 2.74e-01 84.8% 30.2%
3923359 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.63 45.0 2.75e-01 87.9% 31.7%
3923087 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.63 47.0 2.75e-01 87.9% 54.0%
3536326 1073.1.1.0 alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) 0.63 48.0 3.73e-01 97.0% 76.7%
3939980 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.63 45.0 2.71e-01 87.9% 31.9%
4938828 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.29e-01 100.0% 55.0%
None 0.62 47.0 2.79e-01 87.9% 30.2%
3251559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.62e-01 100.0% 66.0%
3650304 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.61 47.0 4.13e-01 100.0% 60.0%
3576957 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.61 46.0 3.25e-01 100.0% 45.0%
4935792 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 48.0 3.27e-01 100.0% 20.6%
3934845 5001.1.1.66 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.61 43.0 2.64e-01 84.8% 32.9%
3934910 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.61 45.0 2.80e-01 87.9% 40.0%
5052753 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 46.0 3.14e-01 100.0% 20.0%
3319421 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 46.0 4.18e-01 90.9% 62.0%
3934035 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.60 44.0 2.69e-01 84.8% 32.9%
3643893 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.60 46.0 3.80e-01 100.0% 61.3%
1489341 330.10.1.1 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.60 43.0 3.14e-01 97.0% 58.2%
3925962 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.60 44.0 2.66e-01 87.9% 30.7%
4256317 375.1.1.38 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Topo_Zn_Ribbon 0.60 42.0 3.80e-01 81.8% 56.4%
3303020 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.14e-01 93.9% 62.0%
3165551 375.1.1.38 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Topo_Zn_Ribbon 0.59 42.0 3.74e-01 81.8% 53.4%
3196528 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 42.0 3.69e-01 84.8% 46.7%
3928178 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.59 42.0 2.57e-01 84.8% 30.7%
3743651 6.1.1.11 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.59 44.0 3.00e-01 97.0% 22.5%
4358798 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 46.0 3.77e-01 100.0% 80.0%
4587696 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.59 48.0 3.59e-01 100.0% 35.0%
4138663 4099.1.1.3 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.57 45.0 3.84e-01 100.0% 67.7%
5044393 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 47.0 4.04e-01 100.0% 63.3%
3302541 1.1.11.6 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 0.57 40.0 2.95e-01 84.8% 96.5%
3317787 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 44.0 4.08e-01 100.0% 64.0%
4030552 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.56 43.0 3.47e-01 100.0% 64.7%
4969039 2005.1.1.10 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.56 43.0 2.82e-01 100.0% 18.9%
5046985 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 41.0 2.52e-01 84.8% 32.2%
3939667 5001.1.1.66 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.56 41.0 2.47e-01 87.9% 30.2%
4253165 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.56 44.0 3.05e-01 97.0% 23.6%
3623169 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 41.0 3.18e-01 100.0% 41.9%
5076296 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.55 39.0 2.48e-01 72.7% 22.1%
4126006 325.1.7.14 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RPOC_hybrid 0.55 43.0 3.71e-01 100.0% 75.4%
4260239 4018.1.1.1 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.55 43.0 2.78e-01 93.9% 16.8%
5017728 4967.1.1.11 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › GIIM 0.55 41.0 3.05e-01 93.9% 85.8%
5051613 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 42.0 3.07e-01 100.0% 32.2%
3932745 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.53 38.0 2.34e-01 87.9% 30.7%
3998976 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.53 38.0 3.64e-01 84.8% 62.2%
3671668 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 40.0 2.66e-01 100.0% 64.3%
3588565 6048.1.1.1 a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 0.52 40.0 3.16e-01 97.0% 37.5%
3656396 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.52 40.0 2.70e-01 100.0% 38.2%
4584785 7.1.1.12 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_1 0.51 39.0 2.85e-01 93.9% 37.0%
3663301 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.51 39.0 2.26e-01 100.0% 11.6%