←Back to structures
LR881103.1__CAD5235975.1__JCHPOGMJ_00006__00006
Bact-VirLR881103.1__CAD5235975.1__JCHPOGMJ_00006__00006
Identity
- Accession:
- LR881103 ↗
- Kingdom:
- phage
Quality
92.4
mean pLDDT
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-100
Domain cluster:
rep: MN187550.1__QGF19659.1__X__00053__D4-97
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13356.13 best | Arm-DNA-bind_3 | 68.5 | 6.20e-19 | 90.7% | 77.1% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.95 | 74.0 | 7.83e-01 | 83.7% | 89.6% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.66 | 46.0 | 4.05e-01 | 70.9% | 81.3% |
| 2v4jB01 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 48.0 | 4.22e-01 | 77.9% | 69.7% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.63 | 44.0 | 4.22e-01 | 74.4% | 72.8% |
| 1nrjA00 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.62 | 52.0 | 4.36e-01 | 93.0% | 76.2% |
| 6qp9B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 43.0 | 2.73e-01 | 74.4% | 97.8% |
| 4innA00 | 2.40.128.520 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 44.0 | 3.68e-01 | 75.6% | 96.6% |
| 4zn4A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 46.0 | 2.97e-01 | 86.0% | 23.2% |
| 8adbA01 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.57 | 40.0 | 3.09e-01 | 74.4% | 31.4% |
| 6ro0F00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 41.0 | 3.95e-01 | 75.6% | 79.6% |
| 3qwmA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 40.0 | 3.60e-01 | 74.4% | 80.3% |
| 3ijcA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 44.0 | 2.97e-01 | 84.9% | 40.3% |
| 1vq0A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.54 | 43.0 | 3.32e-01 | 91.9% | 40.8% |
| 1h6lA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 44.0 | 2.91e-01 | 88.4% | 34.0% |
| 2b5lB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 44.0 | 2.84e-01 | 88.4% | 26.7% |
| 1iucA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.52 | 42.0 | 2.92e-01 | 88.4% | 32.7% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.52 | 38.0 | 3.59e-01 | 77.9% | 86.2% |
| 6t5kC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 43.0 | 3.28e-01 | 94.2% | 55.4% |
| 1x4zA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.65e-01 | 77.9% | 73.0% |
| 4u7aA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 40.0 | 2.70e-01 | 86.0% | 33.1% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3984933 | 252.2.1.5 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 | 0.98 | 92.0 | 9.05e-01 | 97.7% | 92.2% |
| 3942150 | 252.2.1.5 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 | 0.94 | 85.0 | 8.35e-01 | 96.5% | 90.0% |
| 4009814 | 252.2.1.5 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 | 0.92 | 68.0 | 7.76e-01 | 76.7% | 100.0% |
| 136649 | 252.2.1.5 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 | 0.91 | 81.0 | 7.83e-01 | 96.5% | 84.2% |
| 3399944 | 9.1.1.53 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7044 | 0.71 | 39.0 | 4.11e-01 | 83.7% | 58.7% |
| 3948814 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.68 | 49.0 | 4.60e-01 | 75.6% | 61.9% |
| 3320880 | 2004.1.1.299 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 | 0.67 | 46.0 | 3.23e-01 | 70.9% | 85.4% |
| 3773898 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.66 | 53.0 | 5.22e-01 | 90.7% | 87.4% |
| 3968112 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.64 | 45.0 | 3.75e-01 | 74.4% | 43.5% |
| 4441750 | 2.4.1.7 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK | 0.63 | 30.0 | 3.65e-01 | 75.6% | 69.1% |
| 4675181 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.62 | 39.0 | 3.82e-01 | 77.9% | 56.8% |
| 3275758 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.57 | 47.0 | 2.88e-01 | 89.5% | 19.4% |
| 3253996 | 5.1.5.73 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PEP5_VPS11_N | 0.56 | 44.0 | 2.97e-01 | 86.0% | 26.2% |
| 3444104 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 46.0 | 3.11e-01 | 89.5% | 32.8% |
| 3851160 | 5.1.5.61 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Frtz | 0.56 | 45.0 | 2.75e-01 | 88.4% | 40.0% |
| 3709736 | 5.1.4.238 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7048 | 0.56 | 45.0 | 2.93e-01 | 88.4% | 99.2% |
| 3221147 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 43.0 | 2.91e-01 | 83.7% | 33.7% |
| 3230405 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 43.0 | 2.81e-01 | 86.0% | 42.4% |
| 3393982 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 44.0 | 2.88e-01 | 89.5% | 38.1% |
| 3394203 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.54 | 42.0 | 2.95e-01 | 86.0% | 30.3% |
| 3498949 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 46.0 | 2.99e-01 | 100.0% | 66.6% |
| 3191004 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.53 | 47.0 | 2.72e-01 | 100.0% | 56.8% |
| 3789432 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 43.0 | 2.75e-01 | 91.9% | 31.8% |
| 3459953 | 5.1.2.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 | 0.53 | 43.0 | 3.25e-01 | 88.4% | 55.1% |
| 3174263 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 44.0 | 2.83e-01 | 91.9% | 29.8% |
| 3661138 | 511.1.1.1 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 | 0.52 | 38.0 | 3.28e-01 | 76.7% | 96.4% |
| 3730307 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 44.0 | 3.03e-01 | 98.8% | 97.7% |
| 3188055 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 41.0 | 2.68e-01 | 88.4% | 32.1% |
| 3177513 | 5.1.4.164 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 | 0.51 | 42.0 | 2.82e-01 | 90.7% | 43.7% |
| 3245738 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.51 | 39.0 | 3.66e-01 | 83.7% | 92.7% |
| 3605064 | 5.1.4.74 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N | 0.51 | 40.0 | 2.56e-01 | 88.4% | 23.7% |
| None | — | 0.51 | 42.0 | 2.90e-01 | 93.0% | 42.5% | |
| 3738030 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.50 | 34.0 | 3.03e-01 | 81.4% | 45.2% |
D2
high
residues 106-200
Domain cluster:
rep: MZ417522.1__QXN67741.1__X__00024__D64-158
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2khvA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.89 | 73.0 | 7.68e-01 | 85.3% | 97.6% |
| 2kd1A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.87 | 82.0 | 7.56e-01 | 100.0% | 83.1% |
| 2kj9A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.85 | 80.0 | 7.38e-01 | 100.0% | 82.2% |
| 2kj8A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.85 | 79.0 | 7.30e-01 | 100.0% | 82.2% |
| 1z19A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.84 | 79.0 | 7.75e-01 | 100.0% | 97.0% |
| 2kj5A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.83 | 75.0 | 7.03e-01 | 98.9% | 81.9% |
| 3lysA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.83 | 76.0 | 7.37e-01 | 100.0% | 92.4% |
| 3nrwA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.81 | 73.0 | 7.11e-01 | 98.9% | 95.2% |
| 2kiwA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.79 | 64.0 | 6.74e-01 | 86.3% | 100.0% |
| 2kkpA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.79 | 73.0 | 6.78e-01 | 100.0% | 85.5% |
| 2keyA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.74 | 65.0 | 6.18e-01 | 96.8% | 85.7% |
| 1lxlA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.65 | 55.0 | 4.19e-01 | 92.6% | 73.3% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.62 | 51.0 | 5.03e-01 | 100.0% | 85.0% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 45.0 | 4.78e-01 | 93.7% | 97.6% |
| 4b94A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 38.0 | 3.36e-01 | 70.5% | 45.4% |
| 6tqpA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.56 | 46.0 | 4.17e-01 | 92.6% | 80.9% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.56 | 36.0 | 3.97e-01 | 87.4% | 82.4% |
| 3vkgB03 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.54 | 48.0 | 4.10e-01 | 100.0% | 60.3% |
| 2vkjA00 | 1.20.58.2030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 37.0 | 3.58e-01 | 73.7% | 63.2% |
| 1jcjA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 45.0 | 3.39e-01 | 94.7% | 83.3% |
| 1wvtA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.54 | 45.0 | 3.97e-01 | 94.7% | 86.5% |
| 8g52B01 | 1.25.40.920 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TRAP transporter T-component | 0.53 | 43.0 | 3.18e-01 | 91.6% | 32.0% |
| 5l0wB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 37.0 | 3.31e-01 | 72.6% | 58.7% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.52 | 47.0 | 3.97e-01 | 98.9% | 96.1% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3978543 | 186.1.1.8 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M | 0.94 | 89.0 | 8.44e-01 | 100.0% | 85.5% |
| 3984910 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.92 | 87.0 | 8.58e-01 | 100.0% | 94.0% |
| 4004726 | 186.1.1.8 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M | 0.91 | 87.0 | 8.01e-01 | 100.0% | 83.5% |
| 3965042 | 186.1.1.8 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M | 0.91 | 86.0 | 7.99e-01 | 100.0% | 84.3% |
| 3946053 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.90 | 85.0 | 7.48e-01 | 100.0% | 74.6% |
| 3946029 | 186.1.1.8 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M | 0.90 | 85.0 | 7.90e-01 | 100.0% | 84.3% |
| 4007795 | 186.1.1.8 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M | 0.89 | 85.0 | 7.87e-01 | 100.0% | 84.3% |
| 3948596 | 186.1.1.8 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M | 0.89 | 84.0 | 7.79e-01 | 100.0% | 82.6% |
| 3979101 | 186.1.1.8 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M | 0.88 | 82.0 | 7.54e-01 | 100.0% | 82.5% |
| 170034 | 186.1.1.5 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 | 0.87 | 82.0 | 7.78e-01 | 100.0% | 89.1% |
| 3291009 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.86 | 82.0 | 7.87e-01 | 100.0% | 92.4% |
| 3942146 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.86 | 80.0 | 7.90e-01 | 100.0% | 97.0% |
| 4334667 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.86 | 80.0 | 7.87e-01 | 100.0% | 97.0% |
| 3979029 | 186.1.1.8 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M | 0.85 | 79.0 | 7.78e-01 | 98.9% | 96.0% |
| 134568 | 186.1.1.8 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M | 0.85 | 80.0 | 7.95e-01 | 100.0% | 98.0% |
| 3587366 | 186.1.1.5 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 | 0.84 | 78.0 | 7.66e-01 | 100.0% | 94.0% |
| 4437317 | 186.1.1.5 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 | 0.84 | 77.0 | 7.42e-01 | 100.0% | 88.6% |
| 3964154 | 186.1.1.15 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Int_N | 0.84 | 78.0 | 7.64e-01 | 100.0% | 94.0% |
| 3589750 | 186.1.1.5 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 | 0.83 | 77.0 | 7.41e-01 | 100.0% | 89.5% |
| 4034068 | 186.1.1.5 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 | 0.83 | 77.0 | 7.55e-01 | 98.9% | 96.0% |
| 135076 | 186.1.1.8 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M | 0.83 | 75.0 | 7.22e-01 | 98.9% | 88.0% |
| 4172485 | 186.1.1.5 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 | 0.82 | 75.0 | 7.17e-01 | 100.0% | 89.1% |
| 4192110 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.81 | 75.0 | 7.24e-01 | 100.0% | 93.3% |
| 4007982 | 186.1.1.21 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › PF30405 | 0.81 | 74.0 | 6.48e-01 | 100.0% | 88.6% |
| 4142699 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.81 | 74.0 | 7.30e-01 | 98.9% | 98.0% |
| 4053946 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.80 | 73.0 | 7.37e-01 | 100.0% | 100.0% |
| 4473841 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.80 | 72.0 | 7.02e-01 | 98.9% | 95.2% |
| 4216298 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.79 | 73.0 | 7.20e-01 | 100.0% | 99.0% |
| 135559 | 186.1.1.5 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 | 0.78 | 69.0 | 6.78e-01 | 96.8% | 93.2% |
| 3956495 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.78 | 70.0 | 6.70e-01 | 100.0% | 87.3% |
| 2319286 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.75 | 67.0 | 6.61e-01 | 98.9% | 92.2% |
| 5011489 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.74 | 67.0 | 6.76e-01 | 98.9% | 98.9% |
| 5081377 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.72 | 63.0 | 6.27e-01 | 98.9% | 92.0% |
| 5081699 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.72 | 62.0 | 6.40e-01 | 98.9% | 100.0% |
| 4932919 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.72 | 61.0 | 6.27e-01 | 97.9% | 97.8% |
| 3194871 | 186.1.1.17 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Arb1 | 0.71 | 64.0 | 5.96e-01 | 100.0% | 84.2% |
| 4950248 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.70 | 50.0 | 5.03e-01 | 74.7% | 90.5% |
| 3172269 | 633.15.1.1 ↗ | alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N › BCDHK_Adom3 | 0.63 | 48.0 | 4.01e-01 | 81.1% | 90.3% |
| 3937065 | 109.4.1.12 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Clathrin | 0.63 | 41.0 | 2.82e-01 | 75.8% | 18.0% |
| 3016250 | 532.2.1.3 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › TyeA | 0.60 | 51.0 | 5.10e-01 | 93.7% | 97.9% |
| 3262205 | 633.24.1.0 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain | 0.59 | 41.0 | 4.24e-01 | 73.7% | 98.9% |
| 4987950 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.57 | 41.0 | 3.82e-01 | 76.8% | 63.2% |
| 3183237 | 5079.1.1.2 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MBOAT | 0.57 | 42.0 | 3.36e-01 | 78.9% | 82.4% |
| 4945001 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 44.0 | 4.40e-01 | 86.3% | 93.0% |
| 4019479 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.55 | 46.0 | 3.24e-01 | 93.7% | 58.4% |
| 5055834 | 3009.2.1.0 ↗ | alpha arrays › Insertion subdomain in DsbA-like › STAC domain › STAC domain | 0.52 | 40.0 | 4.24e-01 | 93.7% | 98.8% |
| 4414555 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.51 | 42.0 | 3.18e-01 | 92.6% | 65.3% |
D3
medium
residues 215-274_330-397
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00589.28 best | Phage_integrase | 38.6 | 1.40e-09 | 40.6% | 26.7% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.82 | 59.0 | 5.26e-01 | 74.2% | 93.6% |
| 1aihA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.79 | 57.0 | 5.16e-01 | 74.2% | 80.6% |
| 3uxuA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.75 | 66.0 | 6.13e-01 | 94.5% | 98.1% |
| 4a8eA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.73 | 67.0 | 5.90e-01 | 98.4% | 95.0% |
| 1ae9A00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.70 | 57.0 | 5.09e-01 | 84.4% | 98.2% |
| 6lumG01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.57 | 33.0 | 3.50e-01 | 96.9% | 63.4% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.55 | 27.0 | 2.74e-01 | 100.0% | 43.7% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.52 | 25.0 | 2.75e-01 | 98.4% | 51.9% |
| 7xv3R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 44.0 | 3.50e-01 | 96.1% | 85.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3946063 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.92 | 85.0 | 7.20e-01 | 96.9% | 95.9% |
| 4997941 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 72.0 | 5.95e-01 | 93.0% | 94.8% |
| 4954527 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 76.0 | 6.24e-01 | 100.0% | 94.1% |
| 4965640 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 70.0 | 5.64e-01 | 91.4% | 94.8% |
| 5073434 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 71.0 | 6.01e-01 | 93.8% | 98.5% |
| 5012504 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.80 | 72.0 | 6.31e-01 | 95.3% | 97.2% |
| 4954640 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.79 | 69.0 | 5.87e-01 | 93.0% | 99.5% |
| 150341 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.78 | 70.0 | 6.42e-01 | 94.5% | 98.1% |
| 5008693 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.78 | 71.0 | 5.96e-01 | 97.7% | 97.6% |
| 4021119 | 101.1.8.7 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › NDC10_II | 0.77 | 67.0 | 4.87e-01 | 93.0% | 67.2% |
| 3964227 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 43.0 | 4.33e-01 | 89.1% | 54.6% |
| 5041911 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.76 | 68.0 | 6.22e-01 | 95.3% | 95.2% |
| 4977275 | 604.1.1.268 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF5658 | 0.53 | 28.0 | 3.01e-01 | 100.0% | 58.2% |
| 3896730 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 27.0 | 2.71e-01 | 100.0% | 45.9% |
D4
medium
residues 275-329
Domain cluster:
representative
ECOD (1)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.64 | 45.0 | 2.84e-01 | 76.4% | 72.5% |