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LR881104.1__CAD5236176.1__LLCLJKAH_00187__00187

Bact-Vir

LR881104.1__CAD5236176.1__LLCLJKAH_00187__00187

Identity

Accession:
LR881104 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-75
PDB
D2 high residues 86-121_377-483
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.68 36.0 4.50e-01 98.6% 84.7%
2l6hA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.65 34.0 3.36e-01 99.3% 46.8%
5k3hB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 30.0 3.17e-01 100.0% 48.1%
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.60 44.0 4.22e-01 93.7% 66.3%
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.59 33.0 3.55e-01 93.7% 62.2%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.59 33.0 3.71e-01 96.5% 71.0%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.56 34.0 3.70e-01 81.8% 72.6%
4bvxA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 31.0 3.49e-01 80.4% 70.5%
3rh2A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 41.0 3.65e-01 77.6% 66.5%
4l8eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 31.0 3.48e-01 80.4% 70.0%
3o6xA02 1.20.120.1560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 38.0 3.76e-01 100.0% 67.6%
2ccmA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 42.0 3.85e-01 81.1% 89.5%
2a2fX01 1.10.357.30 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Exocyst complex subunit Sec15 C-terminal domain, N-terminal subdomain 0.52 37.0 3.51e-01 72.7% 78.4%
1t33A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 40.0 3.91e-01 100.0% 75.3%
3frqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 39.0 3.61e-01 81.1% 92.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937043 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.67 47.0 3.48e-01 70.6% 34.6%
4974808 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.66 47.0 3.51e-01 72.7% 48.2%
4019810 5045.1.1.3 alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › V_ATPase_I 0.62 44.0 3.37e-01 73.4% 95.7%
5077399 1075.5.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.60 42.0 4.12e-01 73.4% 77.4%
4506363 5058.1.1.73 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › PF27423 0.59 30.0 3.86e-01 99.3% 82.4%
3196570 7558.1.1.11 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase,Acyltransf_C 0.56 41.0 2.99e-01 74.8% 69.9%
4991543 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.56 49.0 3.99e-01 95.1% 89.1%
3637359 604.10.1.7 alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac › DUF202 0.55 34.0 3.99e-01 81.8% 87.0%
3170489 7558.1.1.11 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase,Acyltransf_C 0.55 39.0 3.02e-01 74.1% 79.9%
3926127 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.53 41.0 2.81e-01 80.4% 67.6%
3266494 3447.1.1.4 alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › PEMT 0.51 38.0 3.50e-01 76.9% 88.4%
3743366 304.24.1.7 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › V_ATPase_I 0.51 43.0 3.21e-01 93.0% 100.0%
D3 medium residues 126-297
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.78 29.0 3.91e-01 98.3% 63.2%
3sjqC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 30.0 4.53e-01 98.3% 83.7%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 30.0 4.55e-01 100.0% 89.6%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.70 28.0 4.44e-01 75.0% 96.9%
1rv2D04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.67 28.0 4.40e-01 100.0% 97.1%
3i2wA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 30.0 2.63e-01 100.0% 28.7%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 36.0 4.40e-01 79.7% 90.0%
1bbnA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.61 34.0 3.80e-01 82.0% 69.2%
6o0aA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 47.0 5.00e-01 84.9% 100.0%
1h6gA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.58 34.0 3.88e-01 79.7% 78.2%
3lmfA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 35.0 4.24e-01 87.2% 93.6%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 44.0 4.81e-01 80.2% 100.0%
3rkvA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 27.0 2.93e-01 72.7% 52.4%
3k3uA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 41.0 4.54e-01 76.2% 99.3%
2kbbA00 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.50 38.0 3.85e-01 98.8% 77.0%
2ntxA01 1.20.58.2010 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 0.50 42.0 3.90e-01 86.6% 76.7%
1jgcA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 39.0 4.06e-01 80.2% 87.5%
3dxpA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.50 36.0 3.25e-01 72.7% 81.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3710592 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.72 36.0 4.77e-01 84.3% 86.3%
None 0.67 31.0 2.55e-01 100.0% 25.7%
3402136 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.66 30.0 2.67e-01 100.0% 30.2%
3513588 174.1.1.14 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › NKAIN 0.61 37.0 4.57e-01 82.0% 95.5%
3528346 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 38.0 3.91e-01 80.8% 65.5%
3453205 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.59 43.0 4.79e-01 87.2% 92.1%
3765032 633.23.1.34 alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 0.58 42.0 4.52e-01 86.6% 86.9%
3845930 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.58 42.0 4.61e-01 86.6% 90.7%
3389232 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 35.0 2.92e-01 83.1% 35.2%
4013323 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 40.0 3.13e-01 75.0% 91.8%
4982611 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 29.0 3.27e-01 96.5% 65.5%
3684015 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 31.0 4.04e-01 100.0% 97.0%
5075639 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.54 38.0 4.20e-01 87.8% 89.6%
3701003 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.54 39.0 4.24e-01 84.3% 88.3%
3703244 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.53 31.0 3.53e-01 70.9% 76.0%
3221127 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.53 42.0 4.37e-01 85.5% 88.1%
4013285 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.53 40.0 3.57e-01 77.9% 88.7%
4955536 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.53 41.0 3.74e-01 79.7% 93.2%
3852486 174.1.1.43 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.53 42.0 4.46e-01 85.5% 94.0%
3690688 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 38.0 3.66e-01 97.7% 65.6%
3584915 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.52 26.0 3.57e-01 88.4% 95.3%
4484289 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.52 43.0 4.18e-01 87.2% 97.4%
3603690 601.37.1.8 alpha bundles › Four-helical up-and-down bundle › Photosystem II lipoprotein Psb27 › Photosystem II lipoprotein Psb27 › PF27232 0.51 43.0 4.44e-01 99.4% 92.1%
3208120 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.51 42.0 4.40e-01 87.2% 94.2%
3589723 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 32.0 3.68e-01 81.4% 84.8%
3701829 7015.1.1.1 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.50 40.0 3.83e-01 85.5% 89.3%
D4 medium residues 298-376
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ys8A00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.62 37.0 3.54e-01 89.9% 50.0%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 33.0 3.35e-01 89.9% 54.3%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.58 42.0 3.04e-01 77.2% 97.3%
2yusA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 30.0 3.51e-01 91.1% 73.6%
1ikpA02 3.90.1350.10 Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain 0.53 36.0 2.95e-01 70.9% 84.8%
2yw6B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 42.0 3.47e-01 88.6% 72.7%
1w36B02 1.10.3170.10 Mainly Alpha › Orthogonal Bundle › Recbcd, chain B, domain 2 › Recbcd, chain B, domain 2 0.53 38.0 2.96e-01 77.2% 87.7%
4uyeA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 40.0 3.61e-01 100.0% 60.6%
4qdnA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 40.0 3.60e-01 88.6% 98.3%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.50 31.0 3.47e-01 84.8% 80.6%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079886 159.1.1.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 0.63 31.0 3.23e-01 75.9% 49.3%
3286807 5067.1.1.4 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL 0.55 45.0 3.38e-01 91.1% 54.3%
3386463 3538.1.1.5 extended segments › MerF › MerF › MerF › FHIPEP 0.55 31.0 3.72e-01 89.9% 81.8%
5022961 1075.5.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.55 47.0 3.63e-01 100.0% 70.8%
3472110 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 47.0 4.02e-01 100.0% 98.5%
5060516 1075.5.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.54 46.0 3.47e-01 100.0% 75.7%
3985073 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.53 43.0 3.65e-01 89.9% 94.1%
2323976 1198.1.1.0 alpha bundles › BTA121 › BTA121 › BTA121 0.53 41.0 3.48e-01 86.1% 51.1%
5048260 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 39.0 3.31e-01 86.1% 99.4%