←Back to structures

LR881104.1__CAD5236218.1__LLCLJKAH_00229__00229

Bact-Vir

LR881104.1__CAD5236218.1__LLCLJKAH_00229__00229

Identity

Accession:
LR881104 ↗
Kingdom:
phage

Quality

78.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Eowynvirus› Klebsiella_phage_vB_KvM-Eowyn

TaxID: 2762819

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-72
PDB
Domain cluster: rep: LR881104.1__CAD5236217.1__LLCLJKAH_00228__00228__D12-71
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3i6uA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 48.0 4.30e-01 98.3% 50.6%
2k3dA00 3.10.450.130 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › folded 79 residue fragment of lin0334 like domains 0.62 51.0 4.56e-01 98.3% 63.2%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.61 51.0 4.60e-01 100.0% 68.3%
4b63A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 54.0 3.19e-01 100.0% 35.0%
1fotA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 42.0 3.54e-01 75.0% 85.0%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 49.0 4.11e-01 90.0% 92.2%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.60 47.0 3.70e-01 85.0% 64.8%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.60 50.0 3.86e-01 100.0% 49.3%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.55e-01 100.0% 86.2%
3pgbA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 50.0 4.09e-01 100.0% 72.4%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.57 50.0 4.20e-01 100.0% 66.0%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.57 48.0 4.21e-01 100.0% 99.0%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 39.0 3.14e-01 73.3% 70.8%
3mcsA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 48.0 3.38e-01 100.0% 95.4%
3f44A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 48.0 3.41e-01 100.0% 95.7%
1cwvA04 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.88e-01 86.7% 96.7%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.56 40.0 3.33e-01 76.7% 87.3%
2i9xA00 3.30.1120.40 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Stage V sporulation protein G 0.56 38.0 3.40e-01 71.7% 94.2%
5eoxB03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 36.0 2.82e-01 100.0% 31.2%
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 38.0 2.67e-01 71.7% 34.8%
3ec7A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 46.0 3.70e-01 95.0% 49.2%
6fgjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 42.0 3.16e-01 83.3% 82.0%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.55 45.0 3.59e-01 91.7% 71.5%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.54 47.0 4.15e-01 98.3% 80.2%
4ae5C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.24e-01 91.7% 84.2%
1zunB03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 46.0 3.90e-01 100.0% 97.2%
1ay9A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.54 40.0 3.34e-01 100.0% 45.4%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.53 46.0 2.85e-01 98.3% 19.6%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.53 39.0 3.11e-01 86.7% 57.8%
4k91A02 2.60.410.10 Mainly Beta › Sandwich › Peptidoglycan synthesis regulatory factor (PBP3), Domain 2 › D-Ala-D-Ala carboxypeptidase, C-terminal domain 0.52 42.0 3.77e-01 95.0% 84.6%
5ee2A00 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.52 45.0 3.62e-01 100.0% 57.4%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.74e-01 98.3% 20.5%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.69e-01 100.0% 16.5%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 43.0 3.04e-01 93.3% 75.8%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 39.0 3.92e-01 96.7% 86.9%
2fujA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 42.0 3.47e-01 98.3% 87.3%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3239340 2.1.1.126 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 0.77 53.0 4.78e-01 76.7% 53.8%
5082744 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 49.0 4.29e-01 80.0% 45.6%
3515504 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.69 43.0 4.37e-01 73.3% 64.4%
3203189 9.1.1.63 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PF26335 0.65 56.0 4.44e-01 100.0% 88.7%
3750744 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.65 42.0 4.18e-01 75.0% 62.5%
3249381 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 51.0 3.79e-01 90.0% 65.5%
3626549 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 46.0 2.86e-01 80.0% 13.6%
3487242 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 42.0 4.17e-01 76.7% 65.1%
3652009 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 50.0 4.00e-01 90.0% 73.8%
3497006 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 51.0 3.85e-01 91.7% 66.0%
3240914 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.57e-01 96.7% 75.8%
4032549 243.10.1.1 ↗ a+b two layers › Cystatin-like › Lin0334 protein › Lin0334 protein › DUF1433 0.62 54.0 4.43e-01 100.0% 54.4%
3591210 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.68e-01 100.0% 100.0%
4964827 375.1.1.330 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5795 0.62 48.0 4.87e-01 98.3% 90.0%
4951503 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.61 47.0 3.44e-01 90.0% 31.2%
4950455 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 54.0 5.17e-01 100.0% 87.1%
3952813 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.61 42.0 3.49e-01 73.3% 70.0%
3811281 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 44.0 3.93e-01 76.7% 57.6%
3735830 7552.1.1.1 ↗ a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase 0.60 41.0 2.41e-01 71.7% 19.8%
3183987 331.3.1.30 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 0.60 43.0 2.72e-01 76.7% 26.8%
4830342 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.60 52.0 3.73e-01 100.0% 85.9%
4626453 868.1.1.3 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.59 45.0 3.13e-01 85.0% 58.1%
3607433 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 51.0 3.04e-01 98.3% 18.9%
3493244 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.59 46.0 2.94e-01 90.0% 20.9%
3941021 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.57 48.0 3.04e-01 98.3% 19.0%
3468401 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 49.0 4.33e-01 100.0% 82.2%
3399254 206.1.1.55 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.56 50.0 3.00e-01 100.0% 15.4%
3627521 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 46.0 3.88e-01 90.0% 57.0%
3206632 896.1.1.2 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.56 43.0 3.90e-01 86.7% 78.8%
3693415 222.2.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase 0.55 46.0 4.11e-01 100.0% 76.8%
3725926 2.1.1.94 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.55 40.0 3.55e-01 76.7% 54.1%
178803 243.3.1.9 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YebF 0.54 47.0 4.15e-01 98.3% 80.2%
3233399 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.54 44.0 3.83e-01 93.3% 57.9%
3919645 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.54 46.0 2.80e-01 100.0% 19.5%
4545623 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.53 44.0 3.38e-01 98.3% 47.1%
3932950 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 42.0 2.77e-01 100.0% 35.8%
3416715 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.74e-01 95.0% 73.3%
3638899 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.53 44.0 2.61e-01 98.3% 20.2%
3588456 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.53 44.0 3.31e-01 93.3% 73.5%
4931272 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.53 42.0 3.70e-01 91.7% 70.5%
3164675 274.1.1.51 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › PF27121 0.52 45.0 3.25e-01 98.3% 49.4%
3254218 223.2.1.32 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.52 42.0 3.26e-01 91.7% 61.4%
5061053 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.45e-01 90.0% 77.3%
5021539 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 38.0 2.46e-01 85.0% 24.2%
3935804 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.51 38.0 2.37e-01 85.0% 63.3%
3269703 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 42.0 3.36e-01 100.0% 68.3%
3593707 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.42e-01 95.0% 80.0%
4215896 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 43.0 2.60e-01 98.3% 27.0%
4112326 883.1.1.19 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26544 0.51 43.0 2.98e-01 96.7% 56.2%
3260811 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 34.0 3.39e-01 71.7% 67.7%
None — 0.51 43.0 3.01e-01 96.7% 57.3%
None — 0.50 42.0 3.47e-01 98.3% 87.3%
3738789 316.1.1.25 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 0.50 39.0 2.82e-01 90.0% 57.0%
D2 medium residues 73-153
PDB
Domain cluster: rep: MT939492.1__QNR51825.1__Xoosp14_134__00134__D70-152
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25613.2 best DUF7941 40.6 3.00e-10 98.8% 24.8%
D3 medium residues 154-221
PDB