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LR881104.1__CAD5236264.1__LLCLJKAH_00275__00275

Bact-Vir

LR881104.1__CAD5236264.1__LLCLJKAH_00275__00275

Identity

Accession:
LR881104 ↗
Kingdom:
phage

Quality

74.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-76
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 56.0 6.06e-01 100.0% 88.0%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 57.0 6.03e-01 100.0% 92.5%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 58.0 5.83e-01 100.0% 88.7%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 59.0 5.49e-01 100.0% 74.7%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 58.0 5.87e-01 100.0% 93.2%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 60.0 5.70e-01 100.0% 85.1%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 56.0 5.20e-01 100.0% 68.4%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 57.0 5.77e-01 100.0% 96.6%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 59.0 5.76e-01 100.0% 97.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 57.0 5.61e-01 100.0% 90.6%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 47.0 4.28e-01 75.0% 61.0%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 52.0 4.48e-01 100.0% 54.1%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 52.0 5.21e-01 100.0% 88.5%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 52.0 5.34e-01 93.3% 96.5%
1c48A00 2.40.50.70 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 44.0 4.24e-01 71.7% 66.7%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 51.0 5.13e-01 100.0% 88.9%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 5.38e-01 100.0% 89.6%
6ro0B02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 46.0 3.88e-01 83.3% 63.6%
1droA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 4.10e-01 96.7% 92.6%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 4.22e-01 96.7% 89.2%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 46.0 3.01e-01 88.3% 93.5%
3odtA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 43.0 2.79e-01 81.7% 96.6%
3e4pA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 45.0 3.69e-01 85.0% 91.7%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 43.0 3.38e-01 83.3% 61.2%
3h0gH00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 3.75e-01 96.7% 91.9%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 46.0 3.65e-01 95.0% 81.5%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 47.0 2.94e-01 93.3% 21.8%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 47.0 2.91e-01 93.3% 19.4%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.86e-01 95.0% 98.1%
6i4pA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 48.0 3.82e-01 100.0% 98.4%
3i3lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 48.0 2.90e-01 100.0% 37.2%
4paaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.16e-01 98.3% 58.0%
4x9mA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.22e-01 98.3% 64.9%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 3.40e-01 93.3% 96.2%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.54 46.0 3.89e-01 100.0% 66.4%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 2.96e-01 96.7% 96.6%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.54 40.0 3.64e-01 85.0% 100.0%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 40.0 2.53e-01 83.3% 97.5%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.81e-01 93.3% 59.3%
3ab1B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.14e-01 98.3% 52.8%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.69e-01 100.0% 98.3%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 2.65e-01 98.3% 59.4%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 3.18e-01 98.3% 61.5%
1a62A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 3.42e-01 71.7% 95.7%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 2.74e-01 98.3% 39.5%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 38.0 3.75e-01 88.3% 74.6%
1onfA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.48e-01 98.3% 96.6%
1twuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 35.0 2.77e-01 73.3% 38.0%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.71e-01 100.0% 90.6%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.50 42.0 3.14e-01 98.3% 67.7%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.50 39.0 3.66e-01 86.7% 77.6%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3662072 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 55.0 4.37e-01 100.0% 36.7%
3463181 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 55.0 5.24e-01 100.0% 62.9%
3506500 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.76 51.0 5.81e-01 86.7% 97.7%
3671396 4.1.1.316 beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.74 57.0 5.33e-01 100.0% 68.5%
3226229 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 58.0 5.73e-01 100.0% 84.6%
3846212 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 58.0 5.33e-01 100.0% 68.8%
3885695 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 57.0 5.19e-01 100.0% 66.3%
3995675 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 59.0 5.92e-01 100.0% 93.3%
2717779 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 56.0 5.13e-01 100.0% 67.1%
3566206 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 54.0 5.23e-01 100.0% 75.7%
3398298 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 56.0 5.17e-01 98.3% 68.8%
3898370 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 57.0 5.80e-01 100.0% 96.6%
3366511 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 53.0 5.27e-01 100.0% 81.5%
3512419 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 57.0 5.13e-01 100.0% 67.1%
3778581 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 54.0 5.08e-01 100.0% 72.0%
3638884 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 55.0 4.85e-01 100.0% 61.1%
4038705 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.67 57.0 5.63e-01 100.0% 95.4%
3890893 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 53.0 5.51e-01 96.7% 98.2%
3596004 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 52.0 4.21e-01 100.0% 42.4%
3186993 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 57.0 4.81e-01 100.0% 61.0%
4180663 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.66 49.0 3.97e-01 83.3% 87.2%
3594081 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.93e-01 98.3% 92.5%
3554209 6148.1.1.1 few secondary structure elements › N-terminal domain of EpCAM › N-terminal domain of EpCAM › N-terminal domain of EpCAM › EpCAM_N 0.64 38.0 4.35e-01 86.7% 85.0%
3265019 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 53.0 4.54e-01 96.7% 85.4%
3719452 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 49.0 4.75e-01 98.3% 77.1%
3940063 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 51.0 4.51e-01 96.7% 93.7%
5040713 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.62 49.0 2.88e-01 86.7% 95.0%
3479095 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 51.0 4.26e-01 98.3% 81.7%
4176722 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.61 49.0 4.26e-01 93.3% 86.0%
3178987 2003.1.2.58 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.60 52.0 3.20e-01 100.0% 36.7%
3768832 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.60 47.0 4.93e-01 93.3% 94.5%
3781083 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 50.0 2.89e-01 93.3% 17.6%
3935617 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 43.0 2.68e-01 80.0% 89.1%
4938265 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.58 41.0 4.12e-01 91.7% 76.7%
3834352 3075.1.1.0 a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.58 43.0 2.61e-01 81.7% 64.5%
3441981 220.1.1.187 beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.57 47.0 3.49e-01 93.3% 40.0%
None 0.57 43.0 2.67e-01 81.7% 78.1%
3934850 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 45.0 3.75e-01 95.0% 76.7%
3210653 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 41.0 4.05e-01 90.0% 75.4%
3908674 2003.1.2.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.56 48.0 3.12e-01 98.3% 54.2%
3745751 2003.1.2.14 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO,FAO_M 0.55 47.0 3.13e-01 98.3% 54.0%
None 0.55 47.0 2.87e-01 98.3% 47.0%
5024226 375.1.1.83 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.55 35.0 3.89e-01 88.3% 86.7%
3849631 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.55 47.0 2.85e-01 98.3% 46.2%
None 0.55 48.0 3.29e-01 100.0% 90.0%
3691820 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 47.0 2.78e-01 98.3% 56.0%
3649429 220.1.1.187 beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.55 46.0 3.36e-01 95.0% 41.8%
4927970 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 47.0 3.70e-01 100.0% 77.4%
3291190 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 46.0 3.07e-01 98.3% 50.9%
None 0.54 46.0 3.10e-01 98.3% 69.8%
None 0.54 46.0 2.84e-01 98.3% 51.8%
3728847 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 45.0 2.79e-01 98.3% 37.1%
4368601 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.54 45.0 3.86e-01 95.0% 89.0%
3979749 5.1.3.18 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SdiA-regulated 0.54 42.0 2.84e-01 88.3% 26.1%
5023339 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.54 43.0 4.13e-01 88.3% 88.6%
4964080 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 46.0 3.17e-01 98.3% 51.6%
4945118 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 46.0 3.26e-01 100.0% 55.1%
3731599 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.53 44.0 2.92e-01 98.3% 55.7%
4314942 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 45.0 3.14e-01 98.3% 51.6%
3266790 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 43.0 2.60e-01 90.0% 88.5%
3407414 5.1.4.269 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.53 42.0 2.65e-01 88.3% 19.4%
3221729 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.53 44.0 2.74e-01 98.3% 50.4%
5084069 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 46.0 3.30e-01 100.0% 56.7%
142886 2003.1.2.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 0.52 44.0 3.64e-01 100.0% 88.3%
3799340 5.1.3.114 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MIOS_WD40 0.52 39.0 2.51e-01 86.7% 36.3%
4295607 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 43.0 3.08e-01 98.3% 56.6%
1391704 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 44.0 3.56e-01 100.0% 81.7%
863091 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 43.0 3.64e-01 100.0% 90.4%
3277727 4.8.1.43 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.51 42.0 3.78e-01 100.0% 68.4%
5026972 2003.1.2.38 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lycopene_cycl 0.51 44.0 2.73e-01 100.0% 38.1%
4283079 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 41.0 3.65e-01 96.7% 75.8%
4220854 2003.1.2.38 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lycopene_cycl 0.51 43.0 2.75e-01 98.3% 37.8%
4635248 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.51 43.0 2.69e-01 100.0% 52.5%
None 0.51 42.0 2.39e-01 95.0% 53.3%
3166885 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 42.0 2.59e-01 93.3% 15.6%