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LR990833.1__CAD7757474.1__ARAMI_57__00057

Bact-Vir

LR990833.1__CAD7757474.1__ARAMI_57__00057

Identity

Accession:
LR990833 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aramisvirus› Enterococcus_phage_Aramis

TaxID: 2795668

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-73
PDB
Domain cluster: rep: NC_024356.1__YP_009042710.1__IME_062__00062__D2-67
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 4.99e-01 100.0% 66.3%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.69 48.0 3.76e-01 73.2% 61.8%
2b02A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 50.0 4.48e-01 88.7% 85.6%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 49.0 4.35e-01 85.9% 86.7%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 48.0 4.13e-01 85.9% 72.3%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.81e-01 100.0% 83.1%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.24e-01 100.0% 59.0%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 47.0 3.88e-01 85.9% 62.3%
2r78C00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 46.0 3.98e-01 85.9% 68.1%
4hoiB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 45.0 3.90e-01 83.1% 83.3%
2d42A01 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.58 40.0 2.97e-01 71.8% 87.0%
7xlqD01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 42.0 3.60e-01 85.9% 72.9%
3clqA04 3.90.1700.10 Alpha Beta › Alpha-Beta Complex › v583 fold › v583 domain like 0.56 44.0 3.44e-01 90.1% 91.7%
1sh8B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 43.0 3.46e-01 88.7% 77.2%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.54 42.0 3.83e-01 95.8% 61.9%
1xf1A03 2.60.40.1710 Mainly Beta › Sandwich › Immunoglobulin-like › Subtilisin-like superfamily 0.54 39.0 3.28e-01 77.5% 91.6%
5dstA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.53 43.0 3.27e-01 90.1% 85.9%
2covG00 2.60.40.2450 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-xylanase, CBM31 domain 0.53 40.0 3.80e-01 83.1% 100.0%
3lmbA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 41.0 3.33e-01 90.1% 80.3%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 39.0 2.69e-01 85.9% 70.0%
1e3mA01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.52 36.0 3.08e-01 73.2% 74.0%
3bc8A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 36.0 2.92e-01 73.2% 83.3%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.51 38.0 2.91e-01 97.2% 30.9%
2ougA00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.51 35.0 2.86e-01 71.8% 98.6%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.67e-01 91.5% 82.0%
3mjkA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.51 38.0 3.27e-01 85.9% 52.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4231372 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.77 67.0 6.77e-01 100.0% 95.7%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.75 65.0 6.58e-01 100.0% 97.1%
3272363 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 52.0 4.79e-01 100.0% 62.1%
4930398 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.97e-01 98.6% 100.0%
4321860 304.48.1.17 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B_2 0.61 44.0 3.28e-01 77.5% 37.4%
3451188 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.61 50.0 4.38e-01 94.4% 74.8%
3397417 223.1.1.98 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 0.60 46.0 3.89e-01 84.5% 81.6%
5015688 1.1.8.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › HcyBio 0.59 47.0 4.29e-01 91.5% 94.0%
4378053 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.58 43.0 3.69e-01 81.7% 86.4%
3489060 223.1.1.98 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 0.58 46.0 4.07e-01 88.7% 81.8%
3869669 223.1.1.98 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 0.56 42.0 3.88e-01 85.9% 79.0%
3895480 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.55 46.0 3.71e-01 94.4% 85.5%
4651639 2484.1.1.36 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.55 36.0 2.36e-01 85.9% 13.1%
3593753 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.55 39.0 2.78e-01 76.1% 46.0%
4976343 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.55 42.0 3.63e-01 83.1% 90.3%
4085451 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 38.0 3.41e-01 93.0% 48.2%
3986779 218.5.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Uncharacterized protein › Uncharacterized protein › DUF1116 0.54 42.0 3.37e-01 91.5% 87.9%
3242297 810.1.1.1 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › ChaC 0.54 45.0 3.43e-01 95.8% 86.5%
3755260 223.1.1.102 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › VWA_N, PF30670 0.53 43.0 2.84e-01 93.0% 33.3%
3584922 5.1.4.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.53 38.0 2.64e-01 85.9% 21.6%
3214509 2006.1.6.39 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Mat89Bb 0.53 39.0 2.70e-01 78.9% 35.1%
3789647 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 3.36e-01 100.0% 41.3%
3720815 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.52 45.0 3.92e-01 100.0% 68.7%
3959699 810.1.1.0 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) 0.52 43.0 3.49e-01 95.8% 90.7%
3447934 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.52 36.0 3.31e-01 90.1% 53.0%
3455742 284.2.1.2 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › DUF8223 0.52 41.0 4.24e-01 85.9% 96.9%
4022589 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.51 37.0 2.67e-01 78.9% 72.9%
3189438 2002.1.1.102 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.51 40.0 2.73e-01 93.0% 98.2%
3278316 810.1.1.3 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 0.51 41.0 3.34e-01 95.8% 86.5%