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LR990834.1__CAD7757495.1__ATHO_6__00006

Bact-Vir

LR990834.1__CAD7757495.1__ATHO_6__00006

Identity

Accession:
LR990834 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-87
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c0zA02 1.10.150.480 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.61 44.0 4.16e-01 74.1% 96.9%
6mzbB03 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.61 47.0 3.11e-01 84.0% 69.7%
7y11B01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.61 37.0 4.03e-01 95.1% 76.2%
2hkvA01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.59 50.0 4.31e-01 98.8% 96.5%
5cofA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.57 48.0 3.87e-01 96.3% 90.7%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.57 33.0 3.59e-01 75.3% 69.2%
2ot4A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 46.0 4.30e-01 98.8% 80.4%
6okdA03 1.20.930.40 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Transferrin receptor-like, dimerisation domain 0.53 43.0 3.62e-01 90.1% 81.3%
1iuqA01 1.10.1200.50 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal 0.52 39.0 4.04e-01 97.5% 88.2%
2a2fX02 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.51 34.0 2.97e-01 70.4% 47.3%
1huxA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 41.0 3.46e-01 90.1% 92.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030164 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.65 37.0 3.95e-01 80.2% 64.3%
3280502 620.1.1.6 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB_2 0.63 50.0 4.07e-01 86.4% 91.0%
5003027 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.62 36.0 3.53e-01 79.0% 52.2%
4397957 3678.1.1.1 alpha arrays › Pilus-presented adhesin helical insertion domain › Pilus-presented adhesin helical insertion domain › Pilus-presented adhesin helical insertion domain › TED 0.60 45.0 4.14e-01 79.0% 93.3%
3955770 606.1.1.0 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.58 37.0 3.18e-01 98.8% 40.0%
5041617 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 47.0 4.56e-01 95.1% 81.1%
4097515 4198.1.1.1 alpha arrays › TerB-like › TerB-like › TerB-like › TerB 0.55 40.0 3.48e-01 77.8% 64.6%
3169345 620.1.1.3 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DUF1706 0.54 46.0 3.66e-01 97.5% 89.7%
4669986 4198.1.1.0 alpha arrays › TerB-like › TerB-like › TerB-like 0.54 39.0 3.29e-01 77.8% 58.6%
3249530 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.52 42.0 3.64e-01 90.1% 66.7%
5045366 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.52 43.0 4.28e-01 92.6% 98.8%
4939046 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.50 35.0 3.51e-01 70.4% 73.8%
D2 high residues 97-175
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pfmA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.65 57.0 4.00e-01 100.0% 86.3%
2felA00 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.64 56.0 3.72e-01 100.0% 60.8%
1auwA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.63 54.0 3.97e-01 100.0% 79.4%
3ledA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 42.0 3.13e-01 100.0% 27.9%
1k8kF00 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 42.0 3.34e-01 77.2% 44.9%
2zxiA03 1.10.10.1800 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA 0.57 39.0 3.67e-01 70.9% 70.1%
1w07A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 49.0 3.88e-01 100.0% 75.6%
3ns4A00 1.10.357.110 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus 0.53 43.0 3.24e-01 91.1% 47.8%
3mfnB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.52 45.0 3.95e-01 100.0% 66.7%
6npyB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 36.0 2.85e-01 75.9% 64.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3467501 602.1.1.0 alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like 0.66 58.0 4.15e-01 100.0% 80.8%
3727891 633.23.1.36 alpha bundles › Bromodomain-like › Claudin › Claudin › PF30929 0.62 45.0 3.44e-01 77.2% 77.3%
3911267 109.4.1.73 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Uso1_p115_head 0.59 44.0 3.06e-01 81.0% 61.8%
3838699 3783.1.1.0 alpha bundles › Toxin RnlA C-terminal domain › Toxin RnlA C-terminal domain › Toxin RnlA C-terminal domain 0.58 50.0 3.90e-01 100.0% 69.2%
3378938 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.57 41.0 2.93e-01 77.2% 68.6%
3465947 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.57 42.0 2.95e-01 77.2% 66.5%
5072747 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.56 35.0 3.96e-01 100.0% 83.3%
4618205 604.1.1.150 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.55 41.0 3.60e-01 82.3% 52.5%
4300460 3681.1.1.0 a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.54 44.0 3.99e-01 87.3% 87.6%
3675872 633.6.1.8 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.54 46.0 4.05e-01 100.0% 96.8%
3805313 633.6.1.8 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.54 47.0 3.65e-01 100.0% 56.2%
3176989 601.19.1.40 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28954 0.54 41.0 3.27e-01 82.3% 42.5%
3985490 192.2.1.5 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.52 45.0 3.99e-01 100.0% 98.4%
4241167 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.52 36.0 2.79e-01 72.2% 46.5%
3695955 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 42.0 3.31e-01 89.9% 97.7%
3165010 632.16.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › N-terminal domain of a replication restart primosome factor PriC › N-terminal domain of a replication restart primosome factor PriC › PriC 0.52 45.0 4.45e-01 100.0% 95.3%
4221024 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 2.73e-01 74.7% 30.7%
3674975 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 43.0 2.80e-01 94.9% 44.8%
4248590 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 38.0 3.62e-01 78.5% 96.7%
4527101 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.50 35.0 2.74e-01 72.2% 49.4%
4665476 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.50 36.0 2.72e-01 78.5% 65.1%
D3 high residues 177-258
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.69 49.0 4.55e-01 74.4% 86.4%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 59.0 5.45e-01 97.6% 92.6%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.65 48.0 4.51e-01 79.3% 93.2%
1dkxA02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.65 44.0 4.50e-01 70.7% 92.5%
4rajA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.64 47.0 3.51e-01 78.0% 97.2%
4akgA14 1.20.1280.160 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.62 46.0 4.23e-01 98.8% 59.6%
4zqeA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 55.0 5.22e-01 100.0% 94.8%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.62 36.0 3.83e-01 95.1% 65.8%
3h3mA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.62 37.0 3.60e-01 93.9% 55.1%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.61 54.0 5.23e-01 98.8% 100.0%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.61 36.0 3.33e-01 100.0% 43.2%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 44.0 4.28e-01 76.8% 84.8%
2gbbB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.60 46.0 3.72e-01 81.7% 52.3%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 43.0 3.87e-01 76.8% 79.7%
1ufhA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 42.0 3.49e-01 78.0% 92.9%
4xpwA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.58 43.0 3.75e-01 80.5% 65.6%
4nlbA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.55 39.0 3.77e-01 84.1% 66.0%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 38.0 3.83e-01 74.4% 93.0%
1hciA03 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 38.0 3.39e-01 75.6% 90.0%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.53 34.0 3.49e-01 84.1% 68.8%
3a7mA01 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.52 37.0 3.33e-01 73.2% 76.4%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.52 39.0 3.83e-01 78.0% 97.7%
6fakA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.52 38.0 3.70e-01 80.5% 86.3%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 38.0 3.71e-01 79.3% 98.9%
2gl2B00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 47.0 4.27e-01 100.0% 90.8%
3ck6C02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.51 39.0 3.47e-01 81.7% 82.4%
2l6jA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 41.0 3.78e-01 97.6% 65.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025391 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.73 52.0 5.19e-01 74.4% 85.9%
3362718 611.9.1.0 alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain 0.73 64.0 5.63e-01 97.6% 94.2%
3217364 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.72 46.0 3.69e-01 100.0% 34.7%
134276 3831.1.1.1 alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI 0.69 49.0 4.55e-01 74.4% 86.4%
4385343 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.67 48.0 4.90e-01 75.6% 86.3%
3509997 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.62 46.0 3.44e-01 78.0% 94.6%
3865887 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.62 44.0 4.37e-01 74.4% 90.6%
3923707 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.61 48.0 4.66e-01 89.0% 89.5%
3500323 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.59 50.0 4.03e-01 97.6% 64.7%
3440431 221.1.1.85 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CFAP298 0.57 40.0 3.24e-01 100.0% 38.1%
4947225 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.57 50.0 3.89e-01 97.6% 98.9%
4464634 632.19.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.56 43.0 4.24e-01 84.1% 100.0%
3453972 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.55 40.0 3.26e-01 74.4% 78.6%
3934929 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.55 38.0 3.60e-01 73.2% 88.0%
3251160 5054.1.1.6 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.54 40.0 3.72e-01 89.0% 63.0%
5030379 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.53 47.0 4.61e-01 98.8% 93.3%
3379125 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.51 41.0 3.96e-01 86.6% 91.6%
3497466 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.51 36.0 3.57e-01 75.6% 97.8%
1758759 5054.1.1.59 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.50 37.0 2.72e-01 85.4% 28.0%
3429164 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 35.0 3.41e-01 74.4% 83.2%