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LR990834.1__CAD7757509.1__ATHO_20__00020
Bact-VirLR990834.1__CAD7757509.1__ATHO_20__00020
Identity
- Accession:
- LR990834 ↗
- Kingdom:
- phage
Quality
85.3
mean pLDDT
Taxonomy
TaxID: 2795669
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-156
Domain cluster:
rep: NC_073481.1__YP_010756090.1__QEJ66_gp08__00008__D21-190
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18013.7 best | Phage_lysozyme2 | 91.5 | 7.80e-26 | 97.4% | 94.9% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ct5A00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.86 | 79.0 | 7.77e-01 | 100.0% | 91.2% |
| 4yibA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.65 | 58.0 | 5.72e-01 | 97.4% | 91.1% |
| 4hjzA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.64 | 58.0 | 5.47e-01 | 98.7% | 92.9% |
| 6ukcA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.64 | 51.0 | 5.38e-01 | 99.3% | 96.2% |
| 3w6bB00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.63 | 56.0 | 5.59e-01 | 100.0% | 94.1% |
| 4c5fA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.62 | 56.0 | 5.40e-01 | 97.4% | 100.0% |
| 1k87A02 | 1.10.2060.10 | Mainly Alpha › Orthogonal Bundle › PutA proline dehydrogenase (PRODH), domain 2 › PutA proline dehydrogenase (PRODH), domain 2 | 0.61 | 29.0 | 3.43e-01 | 100.0% | 62.4% |
| 4fdyA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.53 | 48.0 | 4.76e-01 | 97.4% | 96.9% |
| 2uvaG02 | 3.40.366.10 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 | 0.52 | 41.0 | 3.32e-01 | 84.1% | 81.7% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 31.0 | 3.79e-01 | 89.4% | 94.8% |
| 1ztdA00 | 1.10.1520.20 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III | 0.50 | 34.0 | 3.66e-01 | 88.1% | 82.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1253692 | 235.1.1.23 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme2 | 0.86 | 79.0 | 7.72e-01 | 100.0% | 89.5% |
| 3396023 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.66 | 49.0 | 5.47e-01 | 99.3% | 98.3% |
| 4282584 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.64 | 59.0 | 5.50e-01 | 100.0% | 94.6% |
| 3839661 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.62 | 58.0 | 5.56e-01 | 100.0% | 90.6% |
| 4033041 | 3227.1.1.2 ↗ | alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC_2 | 0.58 | 36.0 | 2.77e-01 | 89.4% | 28.2% |
D2
high
residues 167-317
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01551.30 best | Peptidase_M23 | 32.1 | 1.50e-07 | 61.6% | 72.9% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hsiB02 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.85 | 65.0 | 6.63e-01 | 98.0% | 80.8% |
| 1qwyA02 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.82 | 69.0 | 6.60e-01 | 97.4% | 76.7% |
| 4rnyA03 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.82 | 68.0 | 7.37e-01 | 98.0% | 100.0% |
| 4bh5A00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.81 | 68.0 | 7.36e-01 | 98.0% | 100.0% |
| 7qrlA01 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.81 | 66.0 | 7.03e-01 | 95.4% | 94.1% |
| 2gu1A03 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.81 | 68.0 | 7.33e-01 | 98.7% | 100.0% |
| 6jn7A01 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.80 | 69.0 | 6.48e-01 | 100.0% | 76.6% |
| 3tufB00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.76 | 72.0 | 7.09e-01 | 100.0% | 94.9% |
| 5b0hA00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.74 | 62.0 | 6.65e-01 | 96.0% | 100.0% |
| 6fopA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.61 | 51.0 | 4.41e-01 | 88.1% | 64.6% |
| 5upiA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.61 | 51.0 | 4.71e-01 | 88.1% | 78.2% |
| 1vr8A00 | 3.40.1000.20 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like | 0.59 | 36.0 | 3.80e-01 | 86.1% | 66.7% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 30.0 | 3.82e-01 | 97.4% | 86.9% |
| 7ufsA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.58 | 48.0 | 3.99e-01 | 88.1% | 83.9% |
| 1wmiA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.57 | 27.0 | 3.44e-01 | 82.8% | 75.0% |
| 3hkzG00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 35.0 | 4.01e-01 | 96.0% | 87.6% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 25.0 | 3.03e-01 | 93.4% | 63.7% |
| 2zfdB00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.52 | 34.0 | 3.91e-01 | 85.4% | 86.2% |
| 1xkpB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 31.0 | 3.47e-01 | 88.7% | 73.6% |
| 6l4qB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 34.0 | 3.58e-01 | 92.7% | 73.3% |
| 3e38A02 | 2.60.40.3090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 27.0 | 3.50e-01 | 92.1% | 93.7% |
| 1wzaA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 27.0 | 3.43e-01 | 88.7% | 91.1% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589154 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.97 | 93.0 | 9.25e-01 | 98.0% | 98.7% |
| 3965283 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.85 | 68.0 | 7.51e-01 | 97.4% | 100.0% |
| 3388302 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.85 | 68.0 | 7.50e-01 | 97.4% | 100.0% |
| 1513000 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.84 | 68.0 | 6.43e-01 | 100.0% | 72.3% |
| 3056400 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.82 | 68.0 | 7.35e-01 | 98.0% | 99.2% |
| 4034361 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.82 | 67.0 | 7.11e-01 | 97.4% | 94.8% |
| 3386468 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.81 | 68.0 | 6.63e-01 | 97.4% | 79.4% |
| None | — | 0.81 | 70.0 | 7.43e-01 | 100.0% | 100.0% | |
| 2774289 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.81 | 70.0 | 6.82e-01 | 100.0% | 83.4% |
| 2663449 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.79 | 65.0 | 7.04e-01 | 99.3% | 99.2% |
| 3957060 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.79 | 66.0 | 6.75e-01 | 99.3% | 90.3% |
| 3966987 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.77 | 73.0 | 7.07e-01 | 98.0% | 90.9% |
| 4931567 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.74 | 69.0 | 6.33e-01 | 98.0% | 90.5% |
| 1877223 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.74 | 62.0 | 6.66e-01 | 96.0% | 100.0% |
| 4941596 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.73 | 67.0 | 6.37e-01 | 97.4% | 93.7% |
| 4463219 | 325.1.6.4 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PS_Dcarbxylase | 0.64 | 60.0 | 5.31e-01 | 100.0% | 85.4% |
| 4626250 | 325.1.6.4 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PS_Dcarbxylase | 0.64 | 58.0 | 5.62e-01 | 100.0% | 88.3% |
| 3386865 | 325.1.6.4 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PS_Dcarbxylase | 0.59 | 55.0 | 5.26e-01 | 100.0% | 88.2% |
| 3890932 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.58 | 49.0 | 3.74e-01 | 89.4% | 73.2% |
| 3331918 | 12.3.1.38 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Rhamnogal_lyase | 0.58 | 47.0 | 3.70e-01 | 88.1% | 84.8% |
| 5042273 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 30.0 | 3.40e-01 | 92.1% | 71.8% |
| 3971872 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.52 | 31.0 | 3.45e-01 | 88.7% | 72.4% |
| 4064881 | 241.1.1.7 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Type_III_SycN | 0.52 | 31.0 | 3.44e-01 | 88.7% | 72.4% |
| 3938884 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 31.0 | 3.58e-01 | 74.2% | 83.8% |