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LR991625.1__CAD7767775.1__DAR_31__00031

Bact-Vir

LR991625.1__CAD7767775.1__DAR_31__00031

Identity

Accession:
LR991625 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-65
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.87 71.0 6.76e-01 100.0% 75.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 56.0 6.13e-01 100.0% 93.8%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 64.0 6.70e-01 100.0% 100.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 57.0 6.29e-01 100.0% 100.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 58.0 5.56e-01 100.0% 72.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 55.0 5.54e-01 94.9% 79.7%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 65.0 6.03e-01 100.0% 77.3%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 5.08e-01 100.0% 66.7%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.73 64.0 5.57e-01 100.0% 81.1%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 56.0 5.40e-01 100.0% 73.5%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 65.0 6.36e-01 100.0% 95.3%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 64.0 6.14e-01 100.0% 100.0%
1dj7B00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.71 63.0 5.89e-01 100.0% 94.5%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.71 63.0 5.98e-01 100.0% 94.2%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 63.0 6.19e-01 100.0% 93.8%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.69 62.0 4.36e-01 100.0% 79.4%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 54.0 5.15e-01 100.0% 71.8%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 62.0 6.03e-01 100.0% 93.8%
1b3qB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 52.0 5.02e-01 86.4% 94.1%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 46.0 4.21e-01 72.9% 91.3%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 59.0 5.73e-01 100.0% 92.4%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 4.85e-01 100.0% 77.1%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 5.01e-01 100.0% 73.6%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 46.0 4.33e-01 74.6% 98.6%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 52.0 5.21e-01 100.0% 89.8%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 5.11e-01 100.0% 90.9%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.64 54.0 5.33e-01 100.0% 90.5%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 48.0 4.73e-01 84.7% 81.8%
3qexA06 3.40.1820.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease H-like motif › DnaQ-like 3'-5' exonuclease 0.63 45.0 3.94e-01 76.3% 81.5%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 48.0 4.68e-01 86.4% 77.6%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.62 50.0 4.46e-01 93.2% 85.4%
1rvjH02 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.62 53.0 4.05e-01 94.9% 42.4%
1xy7B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 45.0 3.61e-01 79.7% 80.3%
3a46A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.61 52.0 4.08e-01 100.0% 61.0%
1k82B01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.61 52.0 4.12e-01 100.0% 61.4%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 45.0 4.43e-01 84.7% 80.3%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.60 41.0 4.33e-01 72.9% 100.0%
1ee8A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.58 47.0 3.93e-01 100.0% 58.3%
1hyuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 48.0 3.45e-01 96.6% 60.4%
8c0zE01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 48.0 3.79e-01 98.3% 95.4%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 47.0 4.50e-01 100.0% 84.9%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.70e-01 100.0% 87.1%
3i6dA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 46.0 3.41e-01 96.6% 50.3%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.54 42.0 3.81e-01 88.1% 93.9%
1c1fA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.58e-01 100.0% 86.7%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.57e-01 100.0% 85.1%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 47.0 4.06e-01 100.0% 96.8%
1q1rA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.48e-01 98.3% 97.7%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.51 34.0 3.62e-01 71.2% 100.0%
3nlcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 2.84e-01 96.6% 68.3%
1twuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 37.0 2.87e-01 78.0% 76.6%
2culA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 38.0 2.76e-01 93.2% 61.8%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.50 41.0 3.61e-01 96.6% 60.0%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3300051 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.84 66.0 6.02e-01 100.0% 65.3%
3589606 4.1.1.109 beta barrels › SH3 › SH3 › SH3 › SH3_13 0.83 75.0 7.06e-01 98.3% 84.3%
3660244 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.80 64.0 5.91e-01 100.0% 68.0%
3660755 4.8.1.21 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.80 64.0 5.90e-01 100.0% 68.0%
598 4.1.1.68 beta barrels › SH3 › SH3 › SH3 › YorP 0.78 64.0 6.08e-01 100.0% 76.1%
3554026 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.77 63.0 6.34e-01 100.0% 86.7%
3247995 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.77 58.0 5.52e-01 100.0% 68.6%
3385654 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 67.0 5.28e-01 96.6% 64.2%
3023952 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 68.0 5.44e-01 98.3% 71.7%
3363360 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.76 60.0 5.27e-01 100.0% 58.8%
3451280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 59.0 4.29e-01 100.0% 31.6%
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.76 62.0 6.24e-01 100.0% 86.7%
3995092 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.76 68.0 4.68e-01 100.0% 29.5%
4888491 4.1.1.73 beta barrels › SH3 › SH3 › SH3 › Cul7 0.76 54.0 5.56e-01 78.0% 78.9%
4376886 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.75 69.0 6.16e-01 100.0% 85.0%
3947959 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 57.0 4.81e-01 83.1% 67.0%
3579728 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 67.0 6.33e-01 100.0% 82.9%
3211367 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 67.0 5.76e-01 100.0% 64.4%
3406663 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 59.0 6.28e-01 88.1% 100.0%
3482676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 66.0 6.62e-01 100.0% 96.7%
3671396 4.1.1.316 beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.74 60.0 5.55e-01 100.0% 71.2%
157818 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 65.0 5.64e-01 100.0% 63.7%
4966131 4.1.3.1 beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › Calci_bind_CcbP 0.74 63.0 5.11e-01 100.0% 50.9%
3256432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 59.0 5.89e-01 100.0% 86.7%
4605602 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 58.0 5.64e-01 100.0% 78.5%
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.89e-01 100.0% 90.9%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.80e-01 98.3% 83.1%
4003181 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 63.0 6.31e-01 98.3% 98.3%
3419491 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.85e-01 100.0% 88.3%
4101587 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.71 64.0 5.25e-01 100.0% 63.8%
4028659 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 64.0 5.75e-01 100.0% 78.8%
3660358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 56.0 5.59e-01 100.0% 85.0%
3591224 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.73e-01 100.0% 96.0%
3234923 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 63.0 6.21e-01 100.0% 95.2%
2726885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.05e-01 100.0% 69.0%
3200432 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 45.0 5.21e-01 71.2% 97.5%
3991896 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 62.0 5.34e-01 100.0% 65.3%
3583296 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 62.0 5.91e-01 100.0% 88.6%
3500084 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.88e-01 100.0% 91.4%
3559960 2006.1.6.66 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.69 60.0 5.64e-01 100.0% 80.0%
4271974 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.69 54.0 5.34e-01 100.0% 79.7%
3480200 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 60.0 5.60e-01 100.0% 97.3%
4501781 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.03e-01 100.0% 81.0%
3396897 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 59.0 5.86e-01 100.0% 93.7%
3701345 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.36e-01 98.3% 86.3%
3626068 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.72e-01 94.9% 98.3%
4208181 4.1.1.70 beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.67 59.0 5.75e-01 100.0% 92.3%
3958145 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.77e-01 98.3% 90.8%
1821014 4.1.1.70 beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.67 58.0 5.73e-01 100.0% 93.8%
3659671 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.66 60.0 5.65e-01 100.0% 84.3%
3586469 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.66 55.0 4.90e-01 100.0% 64.7%
3243256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 58.0 4.14e-01 100.0% 34.9%
3563220 4.1.1.220 beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.65 55.0 4.96e-01 100.0% 68.8%
3725498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 59.0 5.60e-01 100.0% 87.1%
3416672 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 58.0 4.85e-01 100.0% 59.0%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.64 54.0 5.27e-01 100.0% 87.7%
3396958 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.64 53.0 4.50e-01 94.9% 90.0%
4988734 2.10.1.1 beta barrels › OB-fold › CheW › CheW › CheW 0.63 45.0 3.73e-01 79.7% 96.6%
3741277 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.63 53.0 3.27e-01 93.2% 24.3%
4949046 2.10.1.1 beta barrels › OB-fold › CheW › CheW › CheW 0.63 47.0 3.73e-01 86.4% 94.2%
3645592 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.62 54.0 4.58e-01 100.0% 94.0%
2502895 2.27.1.0 beta barrels › OB-fold 0.61 52.0 4.77e-01 96.6% 100.0%
4283451 2003.1.3.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_binding_3 0.56 45.0 2.87e-01 93.2% 48.2%
3798292 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 47.0 3.31e-01 96.6% 85.6%
2884720 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 44.0 3.37e-01 100.0% 75.0%
5064569 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.52 42.0 3.06e-01 91.5% 86.3%
4666962 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.52 36.0 2.96e-01 74.6% 91.3%
None 0.52 41.0 2.60e-01 94.9% 74.1%
5048713 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.51 40.0 2.64e-01 93.2% 39.4%
5052692 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.51 40.0 2.58e-01 93.2% 47.5%
5077602 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.51 41.0 2.81e-01 98.3% 44.1%
5002275 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.50 40.0 2.65e-01 91.5% 43.3%