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LSDeep1_scaffold_41_prodigal-single.1__X__X__00017
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00017
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-90
Domain cluster:
rep: MW805364.1__URC15558.1__DB2_56__00057__D4-86
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rsmA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 34.0 | 3.06e-01 | 93.1% | 48.7% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 47.0 | 3.30e-01 | 100.0% | 65.9% |
| 3tqfA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 3.62e-01 | 94.3% | 99.4% |
| 2bkkA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 33.0 | 3.37e-01 | 86.2% | 62.2% |
| 2mknA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.52 | 25.0 | 3.32e-01 | 82.8% | 88.6% |
| 2fgeA01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 37.0 | 2.70e-01 | 77.0% | 66.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3628286 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.68 | 49.0 | 4.26e-01 | 86.2% | 50.0% |
| 3701279 | 304.107.1.10 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf | 0.65 | 37.0 | 3.67e-01 | 79.3% | 51.6% |
| 3795565 | 174.1.1.14 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › NKAIN | 0.60 | 47.0 | 3.72e-01 | 83.9% | 77.2% |
| 3574082 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.59 | 37.0 | 3.73e-01 | 83.9% | 61.1% |
| 3769170 | 192.2.1.34 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › CpG_bind_C | 0.57 | 42.0 | 3.77e-01 | 77.0% | 73.3% |
| None | — | 0.57 | 44.0 | 2.95e-01 | 82.8% | 48.6% | |
| 3410157 | 3926.1.1.0 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D | 0.56 | 41.0 | 3.49e-01 | 79.3% | 56.7% |
| 3741511 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.53 | 41.0 | 3.14e-01 | 83.9% | 75.5% |
| 3570896 | 2007.5.1.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C | 0.53 | 42.0 | 3.13e-01 | 90.8% | 35.8% |
| 5053585 | 869.1.1.1 ↗ | a+b complex topology › Methenyltetrahydromethanopterin cyclohydrolase › Methenyltetrahydromethanopterin cyclohydrolase › Methenyltetrahydromethanopterin cyclohydrolase › MCH | 0.53 | 45.0 | 3.12e-01 | 96.6% | 94.5% |
| 3470470 | 2004.1.1.171 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Smg8_Smg9 | 0.53 | 44.0 | 3.04e-01 | 90.8% | 65.0% |
| 3705846 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 42.0 | 4.00e-01 | 87.4% | 85.7% |
| 2388540 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 47.0 | 3.64e-01 | 100.0% | 95.0% |
| 3566283 | 4970.1.1.17 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › CpG_bind_C | 0.52 | 41.0 | 3.49e-01 | 94.3% | 51.0% |
| 3690642 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.52 | 45.0 | 3.02e-01 | 100.0% | 53.2% |
| 3929449 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.52 | 44.0 | 3.35e-01 | 93.1% | 58.1% |