←Back to structures
LSDeep1_scaffold_41_prodigal-single.1__X__X__00050
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00050
Identity
- Kingdom:
- phage
Quality
82.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-47
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e9xD02 | 3.40.5.60 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.83 | 74.0 | 6.79e-01 | 100.0% | 85.0% |
| 3anwA02 | 3.40.5.50 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.80 | 70.0 | 6.54e-01 | 100.0% | 79.3% |
| 1jb0D00 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.68 | 56.0 | 4.13e-01 | 100.0% | 37.0% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 46.0 | 3.59e-01 | 78.3% | 80.4% |
| 2wfpA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 52.0 | 4.18e-01 | 100.0% | 45.9% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 42.0 | 3.49e-01 | 84.8% | 93.8% |
| 7wdtA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 46.0 | 3.38e-01 | 100.0% | 46.0% |
| 3fwlA02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 44.0 | 2.67e-01 | 100.0% | 50.7% |
| 1kg1A01 | 6.20.370.10 | Special › Other non-globular › Rhinovirus 14, subunit 4 › | 0.55 | 32.0 | 3.56e-01 | 93.5% | 85.7% |
| 1tocR02 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.54 | 36.0 | 3.36e-01 | 80.4% | 55.2% |
| 1h0hA02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 36.0 | 2.40e-01 | 78.3% | 27.6% |
| 3uoxB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 40.0 | 2.58e-01 | 100.0% | 59.3% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3691283 | 4076.3.1.9 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF1_C | 0.86 | 74.0 | 7.27e-01 | 100.0% | 88.0% |
| 5066664 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.86 | 70.0 | 7.11e-01 | 97.8% | 93.3% |
| 3716713 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.85 | 75.0 | 7.33e-01 | 100.0% | 90.0% |
| 4982789 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.85 | 73.0 | 6.48e-01 | 100.0% | 67.7% |
| 3742088 | 4076.3.1.3 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C | 0.85 | 76.0 | 7.19e-01 | 100.0% | 85.2% |
| 4935547 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.84 | 74.0 | 7.19e-01 | 100.0% | 90.0% |
| 5015232 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.84 | 72.0 | 6.80e-01 | 100.0% | 80.0% |
| 5011186 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.83 | 72.0 | 6.57e-01 | 100.0% | 73.3% |
| 4951589 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.83 | 72.0 | 7.06e-01 | 100.0% | 90.0% |
| 5069341 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.83 | 72.0 | 7.06e-01 | 100.0% | 90.0% |
| 5024995 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.82 | 70.0 | 6.75e-01 | 100.0% | 83.0% |
| 4932084 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.82 | 71.0 | 6.96e-01 | 100.0% | 90.0% |
| 5019734 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.82 | 71.0 | 6.96e-01 | 100.0% | 90.0% |
| 4967982 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.81 | 68.0 | 6.93e-01 | 100.0% | 97.7% |
| 4994655 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.81 | 72.0 | 7.01e-01 | 100.0% | 92.0% |
| 4933005 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.81 | 69.0 | 6.38e-01 | 100.0% | 75.0% |
| 4973337 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.80 | 69.0 | 6.57e-01 | 100.0% | 81.8% |
| 4932061 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.78 | 64.0 | 6.45e-01 | 100.0% | 95.6% |
| 4944185 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.78 | 66.0 | 5.88e-01 | 100.0% | 67.7% |
| 3977412 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.77 | 67.0 | 6.60e-01 | 100.0% | 95.9% |
| 3265780 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.76 | 63.0 | 5.79e-01 | 100.0% | 70.0% |
| 4230268 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.76 | 63.0 | 6.40e-01 | 97.8% | 95.6% |
| 4269273 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.73 | 59.0 | 6.03e-01 | 97.8% | 95.6% |
| 3060783 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.72 | 62.0 | 5.67e-01 | 100.0% | 74.2% |
| 5025099 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.68 | 54.0 | 5.30e-01 | 97.8% | 84.0% |
| 3873942 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 57.0 | 5.18e-01 | 100.0% | 86.2% |
| 3918340 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.66 | 55.0 | 4.90e-01 | 100.0% | 80.0% |
| 3759402 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 52.0 | 4.73e-01 | 100.0% | 87.7% |
| 3510029 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.61 | 51.0 | 4.73e-01 | 97.8% | 95.0% |
| 3509345 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.61 | 51.0 | 3.98e-01 | 97.8% | 54.3% |
| 3557677 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.60 | 50.0 | 4.49e-01 | 100.0% | 85.7% |
| 5003084 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 39.0 | 2.63e-01 | 78.3% | 35.5% |
| 3644383 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 43.0 | 3.45e-01 | 91.3% | 94.0% |
| 3711002 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.54 | 40.0 | 3.73e-01 | 87.0% | 84.6% |
| 5025916 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 37.0 | 2.79e-01 | 78.3% | 50.3% |
| 4936431 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.52 | 41.0 | 3.69e-01 | 100.0% | 84.0% |
| 4936203 | 2003.2.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 | 0.52 | 36.0 | 2.40e-01 | 78.3% | 39.2% |
| 3925978 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.50 | 35.0 | 2.45e-01 | 73.9% | 30.3% |
| 4630278 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.50 | 38.0 | 3.50e-01 | 93.5% | 71.4% |