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LSDeep1_scaffold_41_prodigal-single.1__X__X__00051
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00051
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-126
Domain cluster:
rep: KX268652.1__ANT40731.1__TRS1_19__00018__D16-136
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f5qB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 38.0 | 3.78e-01 | 80.4% | 56.0% |
| 6d2qA02 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.57 | 29.0 | 2.93e-01 | 78.4% | 46.2% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 37.0 | 3.69e-01 | 82.4% | 63.2% |
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 36.0 | 4.10e-01 | 85.3% | 93.2% |
| 3dd7C00 | 1.20.120.1870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain | 0.54 | 40.0 | 3.83e-01 | 79.4% | 83.6% |
| 2or0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 41.0 | 3.35e-01 | 80.4% | 81.2% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 37.0 | 3.32e-01 | 75.5% | 91.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4600617 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.66 | 40.0 | 3.49e-01 | 75.5% | 41.3% |
| 3238440 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.65 | 36.0 | 4.34e-01 | 84.3% | 84.6% |
| 3418471 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.54 | 47.0 | 3.29e-01 | 99.0% | 69.1% |
| 3423796 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.53 | 46.0 | 3.26e-01 | 97.1% | 74.9% |
| None | — | 0.53 | 41.0 | 2.57e-01 | 86.3% | 67.4% | |
| 5022103 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.52 | 38.0 | 2.79e-01 | 76.5% | 90.0% |
| 3348675 | 7516.1.1.47 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Cellulose_synt | 0.52 | 41.0 | 2.54e-01 | 86.3% | 68.8% |
| None | — | 0.52 | 41.0 | 2.57e-01 | 86.3% | 65.2% | |
| 3832422 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.52 | 35.0 | 3.45e-01 | 82.4% | 63.7% |
| 4116722 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.51 | 37.0 | 2.69e-01 | 75.5% | 88.8% |
| 3924630 | 5059.1.1.34 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, Nuc_sug_transp | 0.51 | 41.0 | 2.89e-01 | 86.3% | 55.6% |
| 3559913 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.51 | 35.0 | 3.33e-01 | 85.3% | 58.4% |
| 3703885 | 5059.1.1.34 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, Nuc_sug_transp | 0.50 | 40.0 | 2.89e-01 | 86.3% | 56.1% |
| 3665854 | 5059.1.1.16 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › SLC35F | 0.50 | 40.0 | 2.83e-01 | 86.3% | 82.7% |
| 3988190 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.50 | 40.0 | 2.88e-01 | 86.3% | 47.7% |
| 5069175 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.50 | 33.0 | 3.66e-01 | 73.5% | 86.3% |