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LSDeep1_scaffold_41_prodigal-single.1__X__X__00132
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00132
Identity
- Kingdom:
- phage
Quality
56.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-115_309-391
D2
medium
residues 173-286
D3
medium
residues 392-481
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2c5uA02 | 1.10.3550.20 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › | 0.51 | 36.0 | 3.14e-01 | 73.3% | 51.9% |
D4
medium
residues 482-565
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8d3mA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.65 | 50.0 | 3.63e-01 | 83.3% | 59.6% |
| 2dbuA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.64 | 48.0 | 4.39e-01 | 81.0% | 71.2% |
| 1jfzA00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.63 | 51.0 | 4.25e-01 | 88.1% | 86.5% |
| 2ewfA02 | 1.20.1270.310 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.62 | 46.0 | 4.74e-01 | 78.6% | 92.6% |
| 2qvwC06 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.61 | 50.0 | 4.10e-01 | 89.3% | 79.7% |
| 7r97A01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.60 | 49.0 | 4.13e-01 | 90.5% | 89.2% |
| 1o0wA01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.60 | 47.0 | 3.96e-01 | 88.1% | 89.6% |
| 6h7bA01 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.58 | 46.0 | 4.81e-01 | 90.5% | 98.6% |
| 3hlzA02 | 1.20.120.1090 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.58 | 45.0 | 3.91e-01 | 84.5% | 62.0% |
| 2q7rB00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.56 | 47.0 | 4.01e-01 | 96.4% | 58.5% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.56 | 35.0 | 3.35e-01 | 70.2% | 52.5% |
| 2dgzA01 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.56 | 40.0 | 3.92e-01 | 73.8% | 77.5% |
| 2rrdA00 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.56 | 41.0 | 3.87e-01 | 77.4% | 71.3% |
| 3o3mB01 | 1.20.1270.370 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 44.0 | 4.10e-01 | 94.0% | 70.9% |
| 4oe8C00 | 1.10.8.1170 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 38.0 | 3.84e-01 | 75.0% | 94.3% |
| 4c2mA06 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.54 | 43.0 | 3.49e-01 | 88.1% | 70.1% |
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 39.0 | 3.40e-01 | 76.2% | 86.0% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.53 | 36.0 | 3.78e-01 | 70.2% | 100.0% |
| 1gvnA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 45.0 | 4.47e-01 | 94.0% | 97.7% |
| 1sb7A02 | 3.30.2340.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, insertion domain | 0.52 | 40.0 | 3.44e-01 | 83.3% | 72.8% |
| 3ayfA01 | 1.20.210.10 | Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain | 0.52 | 42.0 | 2.65e-01 | 95.2% | 89.5% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.51 | 44.0 | 4.15e-01 | 92.9% | 81.8% |
| 5dqqA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 38.0 | 3.31e-01 | 81.0% | 58.3% |
| 6nkoC00 | 3.40.50.1380 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylglyoxal synthase-like domain | 0.50 | 39.0 | 3.09e-01 | 86.9% | 84.2% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3736610 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.71 | 47.0 | 4.44e-01 | 75.0% | 57.0% |
| 5084048 | 3831.1.1.15 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › HAAS | 0.70 | 53.0 | 5.38e-01 | 82.1% | 95.3% |
| 3711598 | 327.11.2.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 | 0.65 | 49.0 | 4.25e-01 | 90.5% | 52.3% |
| 3964377 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.64 | 53.0 | 4.34e-01 | 91.7% | 86.5% |
| 4028519 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.64 | 46.0 | 4.31e-01 | 75.0% | 77.0% |
| 3175182 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.63 | 55.0 | 4.48e-01 | 97.6% | 80.6% |
| 4012744 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 49.0 | 4.40e-01 | 84.5% | 60.0% |
| 3920139 | 577.1.1.1 ↗ | alpha arrays › CRIB domain › CRIB domain › CRIB domain › PBD | 0.62 | 45.0 | 4.73e-01 | 77.4% | 100.0% |
| 4172739 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.61 | 49.0 | 4.13e-01 | 89.3% | 92.0% |
| 4999536 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.61 | 50.0 | 4.06e-01 | 90.5% | 83.0% |
| 4983661 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.61 | 43.0 | 3.96e-01 | 72.6% | 75.2% |
| 3690980 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.60 | 48.0 | 4.51e-01 | 88.1% | 85.7% |
| 3611584 | 3050.1.1.0 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain | 0.60 | 50.0 | 4.11e-01 | 96.4% | 50.3% |
| 4551223 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.59 | 48.0 | 3.93e-01 | 90.5% | 84.2% |
| 4942019 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.59 | 41.0 | 4.22e-01 | 71.4% | 98.8% |
| 4017889 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.59 | 51.0 | 4.13e-01 | 100.0% | 89.7% |
| 3838688 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.59 | 46.0 | 3.85e-01 | 88.1% | 82.5% |
| 4574698 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.59 | 42.0 | 3.79e-01 | 75.0% | 63.5% |
| 4485206 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.59 | 47.0 | 3.94e-01 | 91.7% | 87.5% |
| 4997208 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.58 | 49.0 | 3.43e-01 | 96.4% | 99.7% |
| 5014639 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.57 | 49.0 | 4.71e-01 | 97.6% | 100.0% |
| 3495706 | 5050.1.1.23 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › CLN3 | 0.57 | 45.0 | 3.45e-01 | 83.3% | 48.7% |
| 4147641 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.57 | 48.0 | 4.47e-01 | 100.0% | 93.6% |
| 4938670 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.57 | 41.0 | 4.32e-01 | 78.6% | 86.7% |
| 3289339 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 40.0 | 3.16e-01 | 79.8% | 78.5% |
| 3794340 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.54 | 46.0 | 3.61e-01 | 100.0% | 84.9% |
| 5043950 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.54 | 38.0 | 3.96e-01 | 77.4% | 80.0% |
| 4107589 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.54 | 43.0 | 3.97e-01 | 90.5% | 77.4% |
| 4066835 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.53 | 44.0 | 4.02e-01 | 98.8% | 88.0% |
| 3605845 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 46.0 | 3.66e-01 | 97.6% | 99.4% |
| 3958627 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.52 | 44.0 | 3.65e-01 | 98.8% | 70.3% |
| 3270239 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.51 | 38.0 | 3.45e-01 | 78.6% | 75.7% |
| 3686934 | 601.1.1.77 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF3176 | 0.51 | 44.0 | 3.56e-01 | 100.0% | 90.9% |
| 3481289 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.51 | 38.0 | 3.24e-01 | 78.6% | 72.6% |
| 5060802 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.51 | 40.0 | 3.99e-01 | 98.8% | 88.2% |
D5
medium
residues 668-736
D6
medium
residues 921-1046_1062-1102
D7
medium
residues 1103-1200
D8
medium
residues 1201-1275
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iruA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 38.0 | 3.78e-01 | 74.7% | 67.9% |
| 1nu7D02 | 1.20.120.760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle, domain 2 | 0.54 | 41.0 | 3.56e-01 | 85.3% | 64.8% |
| 1zu4A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.54 | 41.0 | 3.97e-01 | 84.0% | 75.9% |
| 5bp3B00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.53 | 40.0 | 2.74e-01 | 84.0% | 21.6% |
| 5tz6B02 | 3.10.129.120 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › | 0.52 | 38.0 | 3.12e-01 | 80.0% | 94.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4045052 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.67 | 54.0 | 4.69e-01 | 88.0% | 99.1% |
| 3413631 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.67 | 47.0 | 4.61e-01 | 73.3% | 71.2% |
| 3580909 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.60 | 42.0 | 3.34e-01 | 72.0% | 43.3% |
| 4254829 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.58 | 43.0 | 3.90e-01 | 80.0% | 100.0% |
| None | — | 0.57 | 39.0 | 3.28e-01 | 70.7% | 51.1% | |
| 4076762 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.56 | 44.0 | 4.10e-01 | 89.3% | 96.0% |
| 3670373 | 5054.1.1.70 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Yip1 | 0.54 | 42.0 | 3.80e-01 | 89.3% | 80.9% |
| 4900432 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.53 | 39.0 | 3.67e-01 | 78.7% | 76.0% |
| 1031811 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.53 | 38.0 | 3.01e-01 | 77.3% | 86.7% |
| 3653669 | 108.1.1.139 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_6, EF-hand_7, EF-hand_8 | 0.52 | 41.0 | 3.43e-01 | 88.0% | 47.1% |
| 3822157 | 108.1.1.114 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_6, EF-hand_7 | 0.52 | 39.0 | 3.08e-01 | 85.3% | 58.4% |
| 3943652 | 3236.1.1.7 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › SBF_like | 0.50 | 42.0 | 2.88e-01 | 100.0% | 90.5% |
D9
medium
residues 1750-1803
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00404.25 best | Dockerin_1 | 26.0 | 1.20e-05 | 94.4% | 82.5% |
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vn6B00 | 1.10.1330.10 | Mainly Alpha › Orthogonal Bundle › Type 1 dockerin domain › Dockerin domain | 0.86 | 72.0 | 6.82e-01 | 100.0% | 76.6% |
| 5lxvB00 | 1.10.1330.10 | Mainly Alpha › Orthogonal Bundle › Type 1 dockerin domain › Dockerin domain | 0.84 | 71.0 | 6.65e-01 | 100.0% | 75.4% |
| 2cclB00 | 1.10.1330.10 | Mainly Alpha › Orthogonal Bundle › Type 1 dockerin domain › Dockerin domain | 0.84 | 76.0 | 7.21e-01 | 100.0% | 83.9% |
| 2oznB02 | 1.10.1330.10 | Mainly Alpha › Orthogonal Bundle › Type 1 dockerin domain › Dockerin domain | 0.83 | 62.0 | 6.41e-01 | 96.3% | 86.3% |
| 6kg9A00 | 1.10.1330.10 | Mainly Alpha › Orthogonal Bundle › Type 1 dockerin domain › Dockerin domain | 0.78 | 67.0 | 6.21e-01 | 98.1% | 74.6% |
| 3kcpA03 | 1.10.1330.10 | Mainly Alpha › Orthogonal Bundle › Type 1 dockerin domain › Dockerin domain | 0.72 | 60.0 | 5.87e-01 | 96.3% | 86.2% |
| 2jacA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.65 | 46.0 | 3.76e-01 | 75.9% | 77.8% |
| 1x2nA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 45.0 | 4.38e-01 | 79.6% | 85.0% |
| 1ij5A03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.61 | 45.0 | 3.46e-01 | 81.5% | 67.9% |
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 46.0 | 4.28e-01 | 81.5% | 70.6% |
| 1akhB00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 46.0 | 4.06e-01 | 81.5% | 73.1% |
| 2sasA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.60 | 45.0 | 3.25e-01 | 87.0% | 44.9% |
| 3eujB00 | 1.10.225.40 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › MukF, C-terminal domain | 0.60 | 42.0 | 3.64e-01 | 75.9% | 61.1% |
| 1aj4A00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.58 | 44.0 | 3.21e-01 | 83.3% | 43.1% |
| 1lfuP00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 43.0 | 3.79e-01 | 81.5% | 63.4% |
| 2m3aA00 | 1.10.10.1900 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like | 0.57 | 45.0 | 4.24e-01 | 88.9% | 79.1% |
| 6tmfT00 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.57 | 42.0 | 4.05e-01 | 81.5% | 89.1% |
| 2bl0C01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 42.0 | 3.86e-01 | 85.2% | 89.3% |
| 2doeA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.56 | 41.0 | 3.67e-01 | 81.5% | 61.4% |
| 1in4A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 3.91e-01 | 87.0% | 94.5% |
| 3cuqA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 3.58e-01 | 75.9% | 80.0% |
| 1uurA03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 43.0 | 3.82e-01 | 92.6% | 93.2% |
| 3m4aA03 | 3.90.15.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 | 0.56 | 45.0 | 3.69e-01 | 100.0% | 83.1% |
| 1v1gA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 41.0 | 2.88e-01 | 81.5% | 35.1% |
| 1s1eA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 41.0 | 2.95e-01 | 81.5% | 36.5% |
| 1p6rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 43.0 | 3.93e-01 | 100.0% | 93.9% |
| 1bjfA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 40.0 | 3.54e-01 | 88.9% | 91.0% |
| 7f0uA01 | 1.10.8.1190 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain | 0.52 | 37.0 | 3.13e-01 | 90.7% | 43.2% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.52 | 37.0 | 3.49e-01 | 75.9% | 83.6% |
| 2o71A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.50 | 37.0 | 3.13e-01 | 77.8% | 81.3% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1892011 | 108.1.2.1 ↗ | alpha arrays › EF-hand › EF-hand-related › Type I dockerin domain › Dockerin_1 | 0.84 | 71.0 | 6.65e-01 | 100.0% | 75.4% |
| 4327654 | 327.16.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF29189 | 0.64 | 36.0 | 3.53e-01 | 92.6% | 48.3% |
| 3975095 | 327.16.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF29189 | 0.62 | 35.0 | 3.46e-01 | 92.6% | 46.7% |
| 45208 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.62 | 46.0 | 4.56e-01 | 81.5% | 89.8% |
| 3330107 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.62 | 45.0 | 4.68e-01 | 79.6% | 92.0% |
| 3873950 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.62 | 44.0 | 3.66e-01 | 77.8% | 46.0% |
| 4213222 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.61 | 46.0 | 4.42e-01 | 81.5% | 81.2% |
| 3873356 | 101.1.1.36 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN | 0.61 | 46.0 | 3.89e-01 | 81.5% | 57.8% |
| 3477866 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.60 | 44.0 | 4.12e-01 | 83.3% | 92.9% |
| 3729903 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 40.0 | 3.81e-01 | 72.2% | 100.0% |
| 3179600 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.59 | 47.0 | 4.40e-01 | 92.6% | 97.1% |
| 3533097 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.58 | 44.0 | 3.94e-01 | 85.2% | 86.3% |
| 3187353 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.58 | 40.0 | 3.91e-01 | 92.6% | 66.7% |
| 3908715 | 108.1.1.28 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 | 0.57 | 43.0 | 3.70e-01 | 83.3% | 75.6% |
| 3940696 | 101.1.1.103 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 | 0.57 | 42.0 | 4.36e-01 | 81.5% | 90.0% |
| 3652954 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.56 | 42.0 | 3.94e-01 | 88.9% | 93.3% |
| 3330880 | 108.1.1.112 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5 | 0.56 | 44.0 | 4.31e-01 | 92.6% | 95.0% |
| 4449700 | 108.1.1.26 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 | 0.56 | 44.0 | 3.56e-01 | 92.6% | 67.5% |
| 4095883 | 101.1.2.268 ↗ | alpha arrays › HTH › HTH › winged helix domain › CvfB_WH | 0.56 | 39.0 | 3.58e-01 | 77.8% | 83.7% |
| 3472384 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.55 | 40.0 | 3.82e-01 | 83.3% | 92.9% |
| 4082179 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.55 | 45.0 | 2.78e-01 | 98.1% | 44.2% |
| 3592226 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 40.0 | 3.23e-01 | 88.9% | 100.0% |
| 3343432 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.53 | 41.0 | 3.87e-01 | 90.7% | 97.1% |
| 3919874 | 108.1.1.96 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 | 0.53 | 42.0 | 3.81e-01 | 94.4% | 87.5% |
| 4969546 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 41.0 | 3.68e-01 | 87.0% | 62.5% |
| 4979322 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.53 | 41.0 | 3.83e-01 | 87.0% | 72.9% |
| 3737948 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.53 | 38.0 | 3.72e-01 | 79.6% | 98.3% |
| 4539047 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.52 | 40.0 | 3.58e-01 | 94.4% | 77.8% |
| 3614063 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 40.0 | 3.56e-01 | 88.9% | 78.8% |
| 4964961 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 43.0 | 3.66e-01 | 98.1% | 94.7% |
| 3707645 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.51 | 37.0 | 3.29e-01 | 87.0% | 67.4% |
| 3885541 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.50 | 41.0 | 3.86e-01 | 98.1% | 75.4% |
D10
medium
residues 1804-1886